Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17013 | 3' | -49.8 | NC_004333.2 | + | 36289 | 0.66 | 0.951044 |
Target: 5'- cCGCGACGaca--AGGugCUCGCGCc- -3' miRNA: 3'- -GUGUUGCauaagUCUugGAGCGCGcc -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 47043 | 0.66 | 0.94631 |
Target: 5'- uGCAACGUcgcgcgCAGcacggcaccGACUUCGCGCGc -3' miRNA: 3'- gUGUUGCAuaa---GUC---------UUGGAGCGCGCc -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 44290 | 0.66 | 0.945821 |
Target: 5'- gCACAAUGcgccGUUCgacuucuggauuuGGAACCUCGUucuGCGGc -3' miRNA: 3'- -GUGUUGCa---UAAG-------------UCUUGGAGCG---CGCC- -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 12276 | 0.66 | 0.941284 |
Target: 5'- gACAACGUAcaCGGcACCggcggCGCGCa- -3' miRNA: 3'- gUGUUGCAUaaGUCuUGGa----GCGCGcc -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 30853 | 0.66 | 0.941284 |
Target: 5'- aUACAGCGcgaUCAGAucauCCUCGgGCa- -3' miRNA: 3'- -GUGUUGCauaAGUCUu---GGAGCgCGcc -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 18366 | 0.66 | 0.935964 |
Target: 5'- aACGGCGUG-UCGuuuAACCUCGC-CGGc -3' miRNA: 3'- gUGUUGCAUaAGUc--UUGGAGCGcGCC- -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 25709 | 0.66 | 0.935964 |
Target: 5'- gCugGACaccaUGUUCAcGAGCCUCGgGCaGGu -3' miRNA: 3'- -GugUUGc---AUAAGU-CUUGGAGCgCG-CC- -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 9255 | 0.66 | 0.930347 |
Target: 5'- uCGCcGCGUGcggCAuAGCCuUCGUGCGGa -3' miRNA: 3'- -GUGuUGCAUaa-GUcUUGG-AGCGCGCC- -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 22761 | 0.67 | 0.924432 |
Target: 5'- gGCGACGUcguAUUCAGGACUgcguUCGaUGCGc -3' miRNA: 3'- gUGUUGCA---UAAGUCUUGG----AGC-GCGCc -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 23870 | 0.67 | 0.924432 |
Target: 5'- gACGACGacGUUCGGGuucguGCCgccguucaUCGUGCGGa -3' miRNA: 3'- gUGUUGCa-UAAGUCU-----UGG--------AGCGCGCC- -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 28281 | 0.67 | 0.924432 |
Target: 5'- gACGGCGcggAUggccCAGAGCUgcugaGCGCGGg -3' miRNA: 3'- gUGUUGCa--UAa---GUCUUGGag---CGCGCC- -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 46532 | 0.67 | 0.911708 |
Target: 5'- gCGCAGCGcAUUCAGGGCUaCGcCGCc- -3' miRNA: 3'- -GUGUUGCaUAAGUCUUGGaGC-GCGcc -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 38224 | 0.67 | 0.911708 |
Target: 5'- aCACAACGUgcgGUUC-GAcggcaaacACCU-GCGCGGc -3' miRNA: 3'- -GUGUUGCA---UAAGuCU--------UGGAgCGCGCC- -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 11898 | 0.67 | 0.904902 |
Target: 5'- uCGCAugGcg--CAGGACgUCGCGUGu -3' miRNA: 3'- -GUGUugCauaaGUCUUGgAGCGCGCc -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 34289 | 0.67 | 0.904902 |
Target: 5'- gCGCAGCccGUgcCGGccGACUUCGCGCGGc -3' miRNA: 3'- -GUGUUGcaUAa-GUC--UUGGAGCGCGCC- -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 10967 | 0.67 | 0.897804 |
Target: 5'- cCACAGCGUcgcgCGGAACUcggcaccggCGCGCGu -3' miRNA: 3'- -GUGUUGCAuaa-GUCUUGGa--------GCGCGCc -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 37728 | 0.67 | 0.897804 |
Target: 5'- gGCGGCGUGUgUCAGAGCggcuuugagUUUGUGCGa -3' miRNA: 3'- gUGUUGCAUA-AGUCUUG---------GAGCGCGCc -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 14844 | 0.68 | 0.890418 |
Target: 5'- cCACGGCGUGccgaUCAGAAUgaCGC-CGGa -3' miRNA: 3'- -GUGUUGCAUa---AGUCUUGgaGCGcGCC- -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 3677 | 0.68 | 0.890418 |
Target: 5'- uCGCGACGg--UCuGAGCCgUCGCgucguagcuGCGGa -3' miRNA: 3'- -GUGUUGCauaAGuCUUGG-AGCG---------CGCC- -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 17428 | 0.68 | 0.874802 |
Target: 5'- gUACAGCG-AUUCGGugaguACCUCG-GCGa -3' miRNA: 3'- -GUGUUGCaUAAGUCu----UGGAGCgCGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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