Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17013 | 3' | -49.8 | NC_004333.2 | + | 36289 | 0.66 | 0.951044 |
Target: 5'- cCGCGACGaca--AGGugCUCGCGCc- -3' miRNA: 3'- -GUGUUGCauaagUCUugGAGCGCGcc -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 39931 | 1.12 | 0.00223 |
Target: 5'- gCACAACGUAUUCAGAACCUCGCGCGGg -3' miRNA: 3'- -GUGUUGCAUAAGUCUUGGAGCGCGCC- -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 35135 | 0.71 | 0.706302 |
Target: 5'- -uCAGCGUGUcgggcaUCuugauGGACCUCGCGCaGGc -3' miRNA: 3'- guGUUGCAUA------AGu----CUUGGAGCGCG-CC- -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 38463 | 0.69 | 0.821727 |
Target: 5'- aCGCGGCGU-UUCGcGAACCgCGUGCGc -3' miRNA: 3'- -GUGUUGCAuAAGU-CUUGGaGCGCGCc -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 3382 | 0.69 | 0.849368 |
Target: 5'- uCGCGGCGUAUUCcuuGAuCUUCGCGaccuCGGu -3' miRNA: 3'- -GUGUUGCAUAAGu--CUuGGAGCGC----GCC- -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 529 | 0.68 | 0.866584 |
Target: 5'- -uCGACGcauuuuUUCAuGugCUCGCGCGGa -3' miRNA: 3'- guGUUGCau----AAGUcUugGAGCGCGCC- -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 17428 | 0.68 | 0.874802 |
Target: 5'- gUACAGCG-AUUCGGugaguACCUCG-GCGa -3' miRNA: 3'- -GUGUUGCaUAAGUCu----UGGAGCgCGCc -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 18441 | 0.68 | 0.874802 |
Target: 5'- aGCGGCGUG--CAGAACUaCGCgaGCGGu -3' miRNA: 3'- gUGUUGCAUaaGUCUUGGaGCG--CGCC- -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 10967 | 0.67 | 0.897804 |
Target: 5'- cCACAGCGUcgcgCGGAACUcggcaccggCGCGCGu -3' miRNA: 3'- -GUGUUGCAuaa-GUCUUGGa--------GCGCGCc -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 37728 | 0.67 | 0.897804 |
Target: 5'- gGCGGCGUGUgUCAGAGCggcuuugagUUUGUGCGa -3' miRNA: 3'- gUGUUGCAUA-AGUCUUG---------GAGCGCGCc -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 11898 | 0.67 | 0.904902 |
Target: 5'- uCGCAugGcg--CAGGACgUCGCGUGu -3' miRNA: 3'- -GUGUugCauaaGUCUUGgAGCGCGCc -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 47043 | 0.66 | 0.94631 |
Target: 5'- uGCAACGUcgcgcgCAGcacggcaccGACUUCGCGCGc -3' miRNA: 3'- gUGUUGCAuaa---GUC---------UUGGAGCGCGCc -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 30853 | 0.66 | 0.941284 |
Target: 5'- aUACAGCGcgaUCAGAucauCCUCGgGCa- -3' miRNA: 3'- -GUGUUGCauaAGUCUu---GGAGCgCGcc -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 25709 | 0.66 | 0.935964 |
Target: 5'- gCugGACaccaUGUUCAcGAGCCUCGgGCaGGu -3' miRNA: 3'- -GugUUGc---AUAAGU-CUUGGAGCgCG-CC- -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 28281 | 0.67 | 0.924432 |
Target: 5'- gACGGCGcggAUggccCAGAGCUgcugaGCGCGGg -3' miRNA: 3'- gUGUUGCa--UAa---GUCUUGGag---CGCGCC- -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 38224 | 0.67 | 0.911708 |
Target: 5'- aCACAACGUgcgGUUC-GAcggcaaacACCU-GCGCGGc -3' miRNA: 3'- -GUGUUGCA---UAAGuCU--------UGGAgCGCGCC- -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 46532 | 0.67 | 0.911708 |
Target: 5'- gCGCAGCGcAUUCAGGGCUaCGcCGCc- -3' miRNA: 3'- -GUGUUGCaUAAGUCUUGGaGC-GCGcc -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 34289 | 0.67 | 0.904902 |
Target: 5'- gCGCAGCccGUgcCGGccGACUUCGCGCGGc -3' miRNA: 3'- -GUGUUGcaUAa-GUC--UUGGAGCGCGCC- -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 44290 | 0.66 | 0.945821 |
Target: 5'- gCACAAUGcgccGUUCgacuucuggauuuGGAACCUCGUucuGCGGc -3' miRNA: 3'- -GUGUUGCa---UAAG-------------UCUUGGAGCG---CGCC- -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 4656 | 0.73 | 0.638253 |
Target: 5'- gGCGACGgg--CAG-GCCggCGCGCGGg -3' miRNA: 3'- gUGUUGCauaaGUCuUGGa-GCGCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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