miRNA display CGI


Results 21 - 40 of 85 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17013 5' -52.6 NC_004333.2 + 13991 0.71 0.518299
Target:  5'- aGCUGCGC-GCGcUUCuuuGCGUUUCGa -3'
miRNA:   3'- aCGGCGCGuCGC-AAGuuuUGCAGAGC- -5'
17013 5' -52.6 NC_004333.2 + 19204 0.71 0.528081
Target:  5'- gGCCGCGCAacugaucgccGCGUUCGAccGCGUgaacaacgcgugcCUCGg -3'
miRNA:   3'- aCGGCGCGU----------CGCAAGUUu-UGCA-------------GAGC- -5'
17013 5' -52.6 NC_004333.2 + 11710 0.71 0.529173
Target:  5'- cGCCGgGCGGCGUgcu-GGCGUCcugCGc -3'
miRNA:   3'- aCGGCgCGUCGCAaguuUUGCAGa--GC- -5'
17013 5' -52.6 NC_004333.2 + 36215 0.71 0.529173
Target:  5'- cGUCGaCGCuGCGUgCAAGGCG-CUCGa -3'
miRNA:   3'- aCGGC-GCGuCGCAaGUUUUGCaGAGC- -5'
17013 5' -52.6 NC_004333.2 + 43070 0.71 0.540129
Target:  5'- gUGCUGCGCgAGCuGUUCAAcAUG-CUCGu -3'
miRNA:   3'- -ACGGCGCG-UCG-CAAGUUuUGCaGAGC- -5'
17013 5' -52.6 NC_004333.2 + 8171 0.71 0.555593
Target:  5'- gGCCGCGUccaucGCGUacucagugagcggcgUCGAGACGUUUUGa -3'
miRNA:   3'- aCGGCGCGu----CGCA---------------AGUUUUGCAGAGC- -5'
17013 5' -52.6 NC_004333.2 + 9005 0.7 0.58463
Target:  5'- aGCgCGCGCAGCacgggcggCAGGAUGUCgUCGa -3'
miRNA:   3'- aCG-GCGCGUCGcaa-----GUUUUGCAG-AGC- -5'
17013 5' -52.6 NC_004333.2 + 29105 0.7 0.595882
Target:  5'- gGCCGCGCcgAGUGgc---GACGUCUCu -3'
miRNA:   3'- aCGGCGCG--UCGCaaguuUUGCAGAGc -5'
17013 5' -52.6 NC_004333.2 + 32539 0.7 0.607166
Target:  5'- cGUCGCGCGGCGcgCuc-GCGUCg-- -3'
miRNA:   3'- aCGGCGCGUCGCaaGuuuUGCAGagc -5'
17013 5' -52.6 NC_004333.2 + 47756 0.7 0.611687
Target:  5'- cUGCCGCGCAGCcuGUcuugaUCAAGgaucgcgcgcucuacGCG-CUCGg -3'
miRNA:   3'- -ACGGCGCGUCG--CA-----AGUUU---------------UGCaGAGC- -5'
17013 5' -52.6 NC_004333.2 + 45677 0.69 0.617342
Target:  5'- cGUCGCGCccgaucucgaggcAGCG-UCGAu-CGUCUCGa -3'
miRNA:   3'- aCGGCGCG-------------UCGCaAGUUuuGCAGAGC- -5'
17013 5' -52.6 NC_004333.2 + 41871 0.69 0.618474
Target:  5'- gGCUGCGCAGCcuUUCAccAGCGcgCUCGu -3'
miRNA:   3'- aCGGCGCGUCGc-AAGUu-UUGCa-GAGC- -5'
17013 5' -52.6 NC_004333.2 + 7810 0.69 0.629794
Target:  5'- gGCCGCGCGGCGUgugCAc--CGUUa-- -3'
miRNA:   3'- aCGGCGCGUCGCAa--GUuuuGCAGagc -5'
17013 5' -52.6 NC_004333.2 + 40955 0.69 0.663723
Target:  5'- gGUCGCaCGGCaggCGAAACGUUUCGg -3'
miRNA:   3'- aCGGCGcGUCGcaaGUUUUGCAGAGC- -5'
17013 5' -52.6 NC_004333.2 + 8998 0.69 0.663723
Target:  5'- cGaCCGaCGCGGCGUUCGcggcuugccAGGCGgcgcgCUCGc -3'
miRNA:   3'- aC-GGC-GCGUCGCAAGU---------UUUGCa----GAGC- -5'
17013 5' -52.6 NC_004333.2 + 17403 0.69 0.671611
Target:  5'- cUGCuCGCGCAGCGcggucacgacgcgcUgacgaUCAAAACGUCgccCGg -3'
miRNA:   3'- -ACG-GCGCGUCGC--------------A-----AGUUUUGCAGa--GC- -5'
17013 5' -52.6 NC_004333.2 + 4256 0.69 0.674986
Target:  5'- aUGCCGCGCA-CGUUCGu-GCGcC-CGg -3'
miRNA:   3'- -ACGGCGCGUcGCAAGUuuUGCaGaGC- -5'
17013 5' -52.6 NC_004333.2 + 998 0.69 0.674986
Target:  5'- cUGCUGCGCGgcagcGCGUUCuuccGGCGUCa-- -3'
miRNA:   3'- -ACGGCGCGU-----CGCAAGuu--UUGCAGagc -5'
17013 5' -52.6 NC_004333.2 + 11047 0.68 0.686206
Target:  5'- cGUCGUGCGGCGU---GAGCGcUUCGa -3'
miRNA:   3'- aCGGCGCGUCGCAaguUUUGCaGAGC- -5'
17013 5' -52.6 NC_004333.2 + 7114 0.68 0.686206
Target:  5'- cGCaCGUGCggauuGGCGgcgCGAAACGUgUCGa -3'
miRNA:   3'- aCG-GCGCG-----UCGCaa-GUUUUGCAgAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.