miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17014 5' -57.7 NC_004333.2 + 39774 1.07 0.000693
Target:  5'- aUCGGCGACGUUGCUCGACACGGGCUAc -3'
miRNA:   3'- -AGCCGCUGCAACGAGCUGUGCCCGAU- -5'
17014 5' -57.7 NC_004333.2 + 13831 0.77 0.112978
Target:  5'- aCGGCGACG--GUUCGACgACGGGCg- -3'
miRNA:   3'- aGCCGCUGCaaCGAGCUG-UGCCCGau -5'
17014 5' -57.7 NC_004333.2 + 39649 0.76 0.122862
Target:  5'- cCGGUcGCGcUGUUCGGCACGGGCg- -3'
miRNA:   3'- aGCCGcUGCaACGAGCUGUGCCCGau -5'
17014 5' -57.7 NC_004333.2 + 41430 0.76 0.129892
Target:  5'- aUCGaacaGGCGcUGCUCGACGCGGGCg- -3'
miRNA:   3'- -AGCcg--CUGCaACGAGCUGUGCCCGau -5'
17014 5' -57.7 NC_004333.2 + 43372 0.75 0.149118
Target:  5'- -gGGCGGCGUaugaGCgucacgCGACGCGGGCUc -3'
miRNA:   3'- agCCGCUGCAa---CGa-----GCUGUGCCCGAu -5'
17014 5' -57.7 NC_004333.2 + 19216 0.73 0.206151
Target:  5'- gCGGCGuuccgcACGgcGCUCGAgcaaUACGGGCUGg -3'
miRNA:   3'- aGCCGC------UGCaaCGAGCU----GUGCCCGAU- -5'
17014 5' -57.7 NC_004333.2 + 8632 0.72 0.241216
Target:  5'- aUGcGCGACGUcgaGCUCGGCGCGGcGCc- -3'
miRNA:   3'- aGC-CGCUGCAa--CGAGCUGUGCC-CGau -5'
17014 5' -57.7 NC_004333.2 + 22198 0.71 0.274117
Target:  5'- uUCGGCGgcuGCGgccUGCUCGAUgccgagACGGGCc- -3'
miRNA:   3'- -AGCCGC---UGCa--ACGAGCUG------UGCCCGau -5'
17014 5' -57.7 NC_004333.2 + 9956 0.71 0.281114
Target:  5'- gCGGCG-CGcUUGCUCGACuCGGGg-- -3'
miRNA:   3'- aGCCGCuGC-AACGAGCUGuGCCCgau -5'
17014 5' -57.7 NC_004333.2 + 41671 0.71 0.281822
Target:  5'- cCGGCaaggagaauauccuCG-UGCUCGACGCGGGCg- -3'
miRNA:   3'- aGCCGcu------------GCaACGAGCUGUGCCCGau -5'
17014 5' -57.7 NC_004333.2 + 13954 0.71 0.288252
Target:  5'- cCGGCGGCGacaaugUGCgauucaaGAUACGGGCg- -3'
miRNA:   3'- aGCCGCUGCa-----ACGag-----CUGUGCCCGau -5'
17014 5' -57.7 NC_004333.2 + 13883 0.7 0.310518
Target:  5'- cCGcGCGAaGUcgGC-CGGCACGGGCUGc -3'
miRNA:   3'- aGC-CGCUgCAa-CGaGCUGUGCCCGAU- -5'
17014 5' -57.7 NC_004333.2 + 43314 0.7 0.310518
Target:  5'- gCGGCGGCaGcgGCaUCGGCACGGcGCg- -3'
miRNA:   3'- aGCCGCUG-CaaCG-AGCUGUGCC-CGau -5'
17014 5' -57.7 NC_004333.2 + 43014 0.7 0.318226
Target:  5'- -aGGCGcaagcuGCGcUGCUCGACaacACGGGCg- -3'
miRNA:   3'- agCCGC------UGCaACGAGCUG---UGCCCGau -5'
17014 5' -57.7 NC_004333.2 + 41586 0.7 0.326076
Target:  5'- -gGGCGGCGcgccgugGCggCGAUGCGGGCUu -3'
miRNA:   3'- agCCGCUGCaa-----CGa-GCUGUGCCCGAu -5'
17014 5' -57.7 NC_004333.2 + 32297 0.7 0.342204
Target:  5'- aUGGCGgucACGgcgGCUCGcuCGCGGGCUc -3'
miRNA:   3'- aGCCGC---UGCaa-CGAGCu-GUGCCCGAu -5'
17014 5' -57.7 NC_004333.2 + 418 0.69 0.350482
Target:  5'- gCGGCGAUG-UGCUUGGCACagucggccgGGGUg- -3'
miRNA:   3'- aGCCGCUGCaACGAGCUGUG---------CCCGau -5'
17014 5' -57.7 NC_004333.2 + 36760 0.69 0.358901
Target:  5'- -aGGCGACG-UGCUgCGGCauuucaucGCGGGCc- -3'
miRNA:   3'- agCCGCUGCaACGA-GCUG--------UGCCCGau -5'
17014 5' -57.7 NC_004333.2 + 5546 0.69 0.384996
Target:  5'- cCGGCGACG--GCUUGGCGCGaGuGCa- -3'
miRNA:   3'- aGCCGCUGCaaCGAGCUGUGC-C-CGau -5'
17014 5' -57.7 NC_004333.2 + 41633 0.68 0.393969
Target:  5'- cUGGCGGCagaUUGUcgGGCGCGGGCUGc -3'
miRNA:   3'- aGCCGCUGc--AACGagCUGUGCCCGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.