Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17014 | 5' | -57.7 | NC_004333.2 | + | 418 | 0.69 | 0.350482 |
Target: 5'- gCGGCGAUG-UGCUUGGCACagucggccgGGGUg- -3' miRNA: 3'- aGCCGCUGCaACGAGCUGUG---------CCCGau -5' |
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17014 | 5' | -57.7 | NC_004333.2 | + | 3935 | 0.66 | 0.564381 |
Target: 5'- gUGGcCGACGaucUGCuUCGGgACGGGUUGu -3' miRNA: 3'- aGCC-GCUGCa--ACG-AGCUgUGCCCGAU- -5' |
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17014 | 5' | -57.7 | NC_004333.2 | + | 4654 | 0.66 | 0.511298 |
Target: 5'- aUGGCGACGggcagGC-CGGCgcGCGGGUc- -3' miRNA: 3'- aGCCGCUGCaa---CGaGCUG--UGCCCGau -5' |
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17014 | 5' | -57.7 | NC_004333.2 | + | 5134 | 0.66 | 0.532311 |
Target: 5'- gUCGGUGuCGUagaaCUCGACauGCGGGCc- -3' miRNA: 3'- -AGCCGCuGCAac--GAGCUG--UGCCCGau -5' |
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17014 | 5' | -57.7 | NC_004333.2 | + | 5239 | 0.66 | 0.521764 |
Target: 5'- uUCGGCGAUGaaGC-CGGC-CGGGUc- -3' miRNA: 3'- -AGCCGCUGCaaCGaGCUGuGCCCGau -5' |
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17014 | 5' | -57.7 | NC_004333.2 | + | 5494 | 0.67 | 0.500921 |
Target: 5'- gUCGGcCGGCGUggaGacgaUCGGCgcuguuGCGGGCUGc -3' miRNA: 3'- -AGCC-GCUGCAa--Cg---AGCUG------UGCCCGAU- -5' |
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17014 | 5' | -57.7 | NC_004333.2 | + | 5546 | 0.69 | 0.384996 |
Target: 5'- cCGGCGACG--GCUUGGCGCGaGuGCa- -3' miRNA: 3'- aGCCGCUGCaaCGAGCUGUGC-C-CGau -5' |
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17014 | 5' | -57.7 | NC_004333.2 | + | 8632 | 0.72 | 0.241216 |
Target: 5'- aUGcGCGACGUcgaGCUCGGCGCGGcGCc- -3' miRNA: 3'- aGC-CGCUGCAa--CGAGCUGUGCC-CGau -5' |
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17014 | 5' | -57.7 | NC_004333.2 | + | 9956 | 0.71 | 0.281114 |
Target: 5'- gCGGCG-CGcUUGCUCGACuCGGGg-- -3' miRNA: 3'- aGCCGCuGC-AACGAGCUGuGCCCgau -5' |
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17014 | 5' | -57.7 | NC_004333.2 | + | 10170 | 0.68 | 0.421685 |
Target: 5'- gUCGGCGcACuGgaaGCcgagCGACGCGGGCa- -3' miRNA: 3'- -AGCCGC-UG-Caa-CGa---GCUGUGCCCGau -5' |
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17014 | 5' | -57.7 | NC_004333.2 | + | 13831 | 0.77 | 0.112978 |
Target: 5'- aCGGCGACG--GUUCGACgACGGGCg- -3' miRNA: 3'- aGCCGCUGCaaCGAGCUG-UGCCCGau -5' |
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17014 | 5' | -57.7 | NC_004333.2 | + | 13883 | 0.7 | 0.310518 |
Target: 5'- cCGcGCGAaGUcgGC-CGGCACGGGCUGc -3' miRNA: 3'- aGC-CGCUgCAa-CGaGCUGUGCCCGAU- -5' |
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17014 | 5' | -57.7 | NC_004333.2 | + | 13954 | 0.71 | 0.288252 |
Target: 5'- cCGGCGGCGacaaugUGCgauucaaGAUACGGGCg- -3' miRNA: 3'- aGCCGCUGCa-----ACGag-----CUGUGCCCGau -5' |
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17014 | 5' | -57.7 | NC_004333.2 | + | 15517 | 0.66 | 0.553627 |
Target: 5'- cCGGCGGCGcgucaaGCgCGAUguuaGCGGGCa- -3' miRNA: 3'- aGCCGCUGCaa----CGaGCUG----UGCCCGau -5' |
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17014 | 5' | -57.7 | NC_004333.2 | + | 16820 | 0.67 | 0.450543 |
Target: 5'- gCGGCuGCGUcGCUCGGCAgCGGuCUGa -3' miRNA: 3'- aGCCGcUGCAaCGAGCUGU-GCCcGAU- -5' |
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17014 | 5' | -57.7 | NC_004333.2 | + | 16867 | 0.66 | 0.511298 |
Target: 5'- -gGGCGcCG-UGCUCGGCGuCGGcGCa- -3' miRNA: 3'- agCCGCuGCaACGAGCUGU-GCC-CGau -5' |
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17014 | 5' | -57.7 | NC_004333.2 | + | 18201 | 0.66 | 0.542935 |
Target: 5'- cUCGGCGccgguggcagcGCGgccgcGCUCGGCACGcGCUu -3' miRNA: 3'- -AGCCGC-----------UGCaa---CGAGCUGUGCcCGAu -5' |
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17014 | 5' | -57.7 | NC_004333.2 | + | 19141 | 0.68 | 0.421685 |
Target: 5'- -gGGCGGCGcggUGCUCG-CGCuGGUUAu -3' miRNA: 3'- agCCGCUGCa--ACGAGCuGUGcCCGAU- -5' |
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17014 | 5' | -57.7 | NC_004333.2 | + | 19216 | 0.73 | 0.206151 |
Target: 5'- gCGGCGuuccgcACGgcGCUCGAgcaaUACGGGCUGg -3' miRNA: 3'- aGCCGC------UGCaaCGAGCU----GUGCCCGAU- -5' |
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17014 | 5' | -57.7 | NC_004333.2 | + | 19494 | 0.67 | 0.460402 |
Target: 5'- aUCGGCGcuggcgcgcugGCGgcGCUCGugGCcguauGGGCa- -3' miRNA: 3'- -AGCCGC-----------UGCaaCGAGCugUG-----CCCGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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