miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17014 5' -57.7 NC_004333.2 + 13831 0.77 0.112978
Target:  5'- aCGGCGACG--GUUCGACgACGGGCg- -3'
miRNA:   3'- aGCCGCUGCaaCGAGCUG-UGCCCGau -5'
17014 5' -57.7 NC_004333.2 + 44389 0.67 0.450543
Target:  5'- cUCGGCGGCGcgUGCgcgguacaaCGGCcugcCGGGCUc -3'
miRNA:   3'- -AGCCGCUGCa-ACGa--------GCUGu---GCCCGAu -5'
17014 5' -57.7 NC_004333.2 + 41633 0.68 0.393969
Target:  5'- cUGGCGGCagaUUGUcgGGCGCGGGCUGc -3'
miRNA:   3'- aGCCGCUGc--AACGagCUGUGCCCGAU- -5'
17014 5' -57.7 NC_004333.2 + 5546 0.69 0.384996
Target:  5'- cCGGCGACG--GCUUGGCGCGaGuGCa- -3'
miRNA:   3'- aGCCGCUGCaaCGAGCUGUGC-C-CGau -5'
17014 5' -57.7 NC_004333.2 + 41671 0.71 0.281822
Target:  5'- cCGGCaaggagaauauccuCG-UGCUCGACGCGGGCg- -3'
miRNA:   3'- aGCCGcu------------GCaACGAGCUGUGCCCGau -5'
17014 5' -57.7 NC_004333.2 + 22198 0.71 0.274117
Target:  5'- uUCGGCGgcuGCGgccUGCUCGAUgccgagACGGGCc- -3'
miRNA:   3'- -AGCCGC---UGCa--ACGAGCUG------UGCCCGau -5'
17014 5' -57.7 NC_004333.2 + 15517 0.66 0.553627
Target:  5'- cCGGCGGCGcgucaaGCgCGAUguuaGCGGGCa- -3'
miRNA:   3'- aGCCGCUGCaa----CGaGCUG----UGCCCGau -5'
17014 5' -57.7 NC_004333.2 + 45976 0.67 0.470373
Target:  5'- -aGGCGugGUgucccggccUGCcacUCGGCGCcgaGGGCUGg -3'
miRNA:   3'- agCCGCugCA---------ACG---AGCUGUG---CCCGAU- -5'
17014 5' -57.7 NC_004333.2 + 36123 0.67 0.450543
Target:  5'- gUUGGCGACGgccUGCgCGAC-CGGcGCa- -3'
miRNA:   3'- -AGCCGCUGCa--ACGaGCUGuGCC-CGau -5'
17014 5' -57.7 NC_004333.2 + 13883 0.7 0.310518
Target:  5'- cCGcGCGAaGUcgGC-CGGCACGGGCUGc -3'
miRNA:   3'- aGC-CGCUgCAa-CGaGCUGUGCCCGAU- -5'
17014 5' -57.7 NC_004333.2 + 41430 0.76 0.129892
Target:  5'- aUCGaacaGGCGcUGCUCGACGCGGGCg- -3'
miRNA:   3'- -AGCcg--CUGCaACGAGCUGUGCCCGau -5'
17014 5' -57.7 NC_004333.2 + 4654 0.66 0.511298
Target:  5'- aUGGCGACGggcagGC-CGGCgcGCGGGUc- -3'
miRNA:   3'- aGCCGCUGCaa---CGaGCUG--UGCCCGau -5'
17014 5' -57.7 NC_004333.2 + 19216 0.73 0.206151
Target:  5'- gCGGCGuuccgcACGgcGCUCGAgcaaUACGGGCUGg -3'
miRNA:   3'- aGCCGC------UGCaaCGAGCU----GUGCCCGAU- -5'
17014 5' -57.7 NC_004333.2 + 41722 0.68 0.431181
Target:  5'- aCGGCGcgaucaACGagGagaUCGGCGCGGGCg- -3'
miRNA:   3'- aGCCGC------UGCaaCg--AGCUGUGCCCGau -5'
17014 5' -57.7 NC_004333.2 + 5239 0.66 0.521764
Target:  5'- uUCGGCGAUGaaGC-CGGC-CGGGUc- -3'
miRNA:   3'- -AGCCGCUGCaaCGaGCUGuGCCCGau -5'
17014 5' -57.7 NC_004333.2 + 8632 0.72 0.241216
Target:  5'- aUGcGCGACGUcgaGCUCGGCGCGGcGCc- -3'
miRNA:   3'- aGC-CGCUGCAa--CGAGCUGUGCC-CGau -5'
17014 5' -57.7 NC_004333.2 + 19494 0.67 0.460402
Target:  5'- aUCGGCGcuggcgcgcugGCGgcGCUCGugGCcguauGGGCa- -3'
miRNA:   3'- -AGCCGC-----------UGCaaCGAGCugUG-----CCCGau -5'
17014 5' -57.7 NC_004333.2 + 36760 0.69 0.358901
Target:  5'- -aGGCGACG-UGCUgCGGCauuucaucGCGGGCc- -3'
miRNA:   3'- agCCGCUGCaACGA-GCUG--------UGCCCGau -5'
17014 5' -57.7 NC_004333.2 + 19141 0.68 0.421685
Target:  5'- -gGGCGGCGcggUGCUCG-CGCuGGUUAu -3'
miRNA:   3'- agCCGCUGCa--ACGAGCuGUGcCCGAU- -5'
17014 5' -57.7 NC_004333.2 + 10170 0.68 0.421685
Target:  5'- gUCGGCGcACuGgaaGCcgagCGACGCGGGCa- -3'
miRNA:   3'- -AGCCGC-UG-Caa-CGa---GCUGUGCCCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.