miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17017 5' -55.2 NC_004333.2 + 18424 0.72 0.360539
Target:  5'- uCGCGAUCGGCGgcGUCGacacCGCGAGCGc -3'
miRNA:   3'- -GCGCUAGCUGUgaCGGCa---GCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 38364 0.72 0.369119
Target:  5'- -cUGAUCGACGC-GCUGUCGCGuguCGg -3'
miRNA:   3'- gcGCUAGCUGUGaCGGCAGCGCuu-GC- -5'
17017 5' -55.2 NC_004333.2 + 462 0.72 0.386695
Target:  5'- gGCGcgCGACG-UGCCGgcgagCGUGAACGc -3'
miRNA:   3'- gCGCuaGCUGUgACGGCa----GCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 38423 0.72 0.395688
Target:  5'- gGCGAUCGAgACgcuUGCCG-CGuCGAACu -3'
miRNA:   3'- gCGCUAGCUgUG---ACGGCaGC-GCUUGc -5'
17017 5' -55.2 NC_004333.2 + 41449 0.72 0.395688
Target:  5'- aCGCGggCGAguCgGCCGUCGUGAuccaugGCGa -3'
miRNA:   3'- -GCGCuaGCUguGaCGGCAGCGCU------UGC- -5'
17017 5' -55.2 NC_004333.2 + 13925 0.71 0.414071
Target:  5'- gGCGAUCGugGCcGCUGcCGCcAGCGu -3'
miRNA:   3'- gCGCUAGCugUGaCGGCaGCGcUUGC- -5'
17017 5' -55.2 NC_004333.2 + 35818 0.71 0.414071
Target:  5'- gGCGcuaCGGCGCccccGaCCGUCGCGAACGu -3'
miRNA:   3'- gCGCua-GCUGUGa---C-GGCAGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 20659 0.71 0.414071
Target:  5'- uGCGAUCGACAC-GUCGaUCGCuuACa -3'
miRNA:   3'- gCGCUAGCUGUGaCGGC-AGCGcuUGc -5'
17017 5' -55.2 NC_004333.2 + 34333 0.71 0.432971
Target:  5'- uGCGcUCGACGCggcGcCCGUCGuCGAACc -3'
miRNA:   3'- gCGCuAGCUGUGa--C-GGCAGC-GCUUGc -5'
17017 5' -55.2 NC_004333.2 + 23543 0.71 0.432971
Target:  5'- cCGcCGAUCuGCGuaGCUGUCGCGAACGc -3'
miRNA:   3'- -GC-GCUAGcUGUgaCGGCAGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 33340 0.71 0.442608
Target:  5'- -cUGAUCGGCAC-GCCGUggucUGCGAAUGa -3'
miRNA:   3'- gcGCUAGCUGUGaCGGCA----GCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 23425 0.71 0.452364
Target:  5'- aGCGAUCGuCGCcGCguUCGUGAGCGg -3'
miRNA:   3'- gCGCUAGCuGUGaCGgcAGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 47025 0.7 0.462237
Target:  5'- cCGCGAUCGgauauGCAgUGCaaCGUCGCGcGCa -3'
miRNA:   3'- -GCGCUAGC-----UGUgACG--GCAGCGCuUGc -5'
17017 5' -55.2 NC_004333.2 + 22811 0.7 0.462237
Target:  5'- gGUGuUCGucGCGCUGUCGcUCGUGAACGu -3'
miRNA:   3'- gCGCuAGC--UGUGACGGC-AGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 27954 0.7 0.462237
Target:  5'- uCGCGGUCGAuCGCcGCCacgaaagCGCGAGCc -3'
miRNA:   3'- -GCGCUAGCU-GUGaCGGca-----GCGCUUGc -5'
17017 5' -55.2 NC_004333.2 + 9190 0.7 0.472222
Target:  5'- uCGCGA-CGGCAgUGUCGaUCGCGGuGCGc -3'
miRNA:   3'- -GCGCUaGCUGUgACGGC-AGCGCU-UGC- -5'
17017 5' -55.2 NC_004333.2 + 45421 0.7 0.472222
Target:  5'- aCGCGAcCGGCACgGCgGcCGCGAucuCGg -3'
miRNA:   3'- -GCGCUaGCUGUGaCGgCaGCGCUu--GC- -5'
17017 5' -55.2 NC_004333.2 + 15592 0.7 0.4813
Target:  5'- -aCGGUCGcACGCUGCuCGUCggucacgguuucgGCGAACGu -3'
miRNA:   3'- gcGCUAGC-UGUGACG-GCAG-------------CGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 30229 0.7 0.482314
Target:  5'- -uCGAUCGACGC-GCCGcgCGCGAucaguGCGu -3'
miRNA:   3'- gcGCUAGCUGUGaCGGCa-GCGCU-----UGC- -5'
17017 5' -55.2 NC_004333.2 + 28896 0.7 0.496616
Target:  5'- uCGCGcUCGGCGCaggccggcgcauacuUGCCGUCggugcguaGCGGGCGc -3'
miRNA:   3'- -GCGCuAGCUGUG---------------ACGGCAG--------CGCUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.