miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17017 5' -55.2 NC_004333.2 + 38987 1.1 0.000971
Target:  5'- cCGCGAUCGACACUGCCGUCGCGAACGa -3'
miRNA:   3'- -GCGCUAGCUGUGACGGCAGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 25650 0.82 0.085719
Target:  5'- gCGCGGUCGAaagcgucuUGCcgGCCGUCGCGAACGc -3'
miRNA:   3'- -GCGCUAGCU--------GUGa-CGGCAGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 39236 0.79 0.141985
Target:  5'- aCGCGAUgGACAgcGCCGgCGCGAACGa -3'
miRNA:   3'- -GCGCUAgCUGUgaCGGCaGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 9043 0.78 0.158438
Target:  5'- gGUGAUCGGCAagccgaUGCCGUCGCGcAUGu -3'
miRNA:   3'- gCGCUAGCUGUg-----ACGGCAGCGCuUGC- -5'
17017 5' -55.2 NC_004333.2 + 19490 0.77 0.176594
Target:  5'- uGCGAUCGGCGCUGgCG-CGCuGGCGg -3'
miRNA:   3'- gCGCUAGCUGUGACgGCaGCGcUUGC- -5'
17017 5' -55.2 NC_004333.2 + 29751 0.77 0.186349
Target:  5'- uCGCGGugUCGACGCcGCCGaUCGCGAGgCGu -3'
miRNA:   3'- -GCGCU--AGCUGUGaCGGC-AGCGCUU-GC- -5'
17017 5' -55.2 NC_004333.2 + 7239 0.77 0.196576
Target:  5'- uGCGAcCGACugUGgCGUCGCGAAa- -3'
miRNA:   3'- gCGCUaGCUGugACgGCAGCGCUUgc -5'
17017 5' -55.2 NC_004333.2 + 10977 0.76 0.201871
Target:  5'- gCGCGGaacUCGGCACcggcGCgCGUCGUGAGCGg -3'
miRNA:   3'- -GCGCU---AGCUGUGa---CG-GCAGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 33349 0.76 0.212834
Target:  5'- gCGCGAgaaCGGCGC-GCCGUCGUgGAACGc -3'
miRNA:   3'- -GCGCUa--GCUGUGaCGGCAGCG-CUUGC- -5'
17017 5' -55.2 NC_004333.2 + 44501 0.76 0.218505
Target:  5'- aCGCGA-CGGCuCaGaCCGUCGCGAACGa -3'
miRNA:   3'- -GCGCUaGCUGuGaC-GGCAGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 25201 0.75 0.236296
Target:  5'- gGCGAccgguaccgCGACGCUGCCGgcgGCGAACa -3'
miRNA:   3'- gCGCUa--------GCUGUGACGGCag-CGCUUGc -5'
17017 5' -55.2 NC_004333.2 + 18365 0.75 0.251389
Target:  5'- gGCGAUCagcaucaacggcccgGugACcGUCGUCGCGAACGa -3'
miRNA:   3'- gCGCUAG---------------CugUGaCGGCAGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 39636 0.75 0.255285
Target:  5'- aGCGGcCGACuGCUGCCGgaCGCGAACu -3'
miRNA:   3'- gCGCUaGCUG-UGACGGCa-GCGCUUGc -5'
17017 5' -55.2 NC_004333.2 + 698 0.74 0.282528
Target:  5'- gCGCGAUCG-UGCcGCCGccCGCGAGCGc -3'
miRNA:   3'- -GCGCUAGCuGUGaCGGCa-GCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 2490 0.73 0.312024
Target:  5'- aGaCGAUCGACGCUGCC-UCGagauCGGGCGc -3'
miRNA:   3'- gC-GCUAGCUGUGACGGcAGC----GCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 15634 0.73 0.319754
Target:  5'- aGUGAUCGACGCgagcgcGCCG-CGCGA-CGu -3'
miRNA:   3'- gCGCUAGCUGUGa-----CGGCaGCGCUuGC- -5'
17017 5' -55.2 NC_004333.2 + 35782 0.73 0.319754
Target:  5'- gGCGG-CGACACUggcgcGCCGggcggggCGCGGGCGg -3'
miRNA:   3'- gCGCUaGCUGUGA-----CGGCa------GCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 39686 0.73 0.327627
Target:  5'- aCGCGGacgUUGugGCUggcucGCCGUCGCGAgguACGa -3'
miRNA:   3'- -GCGCU---AGCugUGA-----CGGCAGCGCU---UGC- -5'
17017 5' -55.2 NC_004333.2 + 46152 0.73 0.327627
Target:  5'- aCGUGAUCGAUGCgGCCGUgaCGuCGGGCa -3'
miRNA:   3'- -GCGCUAGCUGUGaCGGCA--GC-GCUUGc -5'
17017 5' -55.2 NC_004333.2 + 47471 0.73 0.3438
Target:  5'- aCGCGccggCGGCgACUGCCG-CGCuGAACGa -3'
miRNA:   3'- -GCGCua--GCUG-UGACGGCaGCG-CUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.