miRNA display CGI


Results 1 - 20 of 112 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17017 5' -55.2 NC_004333.2 + 25650 0.82 0.085719
Target:  5'- gCGCGGUCGAaagcgucuUGCcgGCCGUCGCGAACGc -3'
miRNA:   3'- -GCGCUAGCU--------GUGa-CGGCAGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 28896 0.7 0.496616
Target:  5'- uCGCGcUCGGCGCaggccggcgcauacuUGCCGUCggugcguaGCGGGCGc -3'
miRNA:   3'- -GCGCuAGCUGUG---------------ACGGCAG--------CGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 22449 0.69 0.513191
Target:  5'- aCGCGAUggCGAC-CUGCCcgaggcUCGUGAACa -3'
miRNA:   3'- -GCGCUA--GCUGuGACGGc-----AGCGCUUGc -5'
17017 5' -55.2 NC_004333.2 + 5335 0.66 0.739461
Target:  5'- gCGCugGAUCGuCAC-GCCGcCGUGGAUGc -3'
miRNA:   3'- -GCG--CUAGCuGUGaCGGCaGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 698 0.74 0.282528
Target:  5'- gCGCGAUCG-UGCcGCCGccCGCGAGCGc -3'
miRNA:   3'- -GCGCUAGCuGUGaCGGCa-GCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 2490 0.73 0.312024
Target:  5'- aGaCGAUCGACGCUGCC-UCGagauCGGGCGc -3'
miRNA:   3'- gC-GCUAGCUGUGACGGcAGC----GCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 18424 0.72 0.360539
Target:  5'- uCGCGAUCGGCGgcGUCGacacCGCGAGCGc -3'
miRNA:   3'- -GCGCUAGCUGUgaCGGCa---GCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 38364 0.72 0.369119
Target:  5'- -cUGAUCGACGC-GCUGUCGCGuguCGg -3'
miRNA:   3'- gcGCUAGCUGUGaCGGCAGCGCuu-GC- -5'
17017 5' -55.2 NC_004333.2 + 13925 0.71 0.414071
Target:  5'- gGCGAUCGugGCcGCUGcCGCcAGCGu -3'
miRNA:   3'- gCGCUAGCugUGaCGGCaGCGcUUGC- -5'
17017 5' -55.2 NC_004333.2 + 30229 0.7 0.482314
Target:  5'- -uCGAUCGACGC-GCCGcgCGCGAucaguGCGu -3'
miRNA:   3'- gcGCUAGCUGUGaCGGCa-GCGCU-----UGC- -5'
17017 5' -55.2 NC_004333.2 + 22811 0.7 0.462237
Target:  5'- gGUGuUCGucGCGCUGUCGcUCGUGAACGu -3'
miRNA:   3'- gCGCuAGC--UGUGACGGC-AGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 41449 0.72 0.395688
Target:  5'- aCGCGggCGAguCgGCCGUCGUGAuccaugGCGa -3'
miRNA:   3'- -GCGCuaGCUguGaCGGCAGCGCU------UGC- -5'
17017 5' -55.2 NC_004333.2 + 19490 0.77 0.176594
Target:  5'- uGCGAUCGGCGCUGgCG-CGCuGGCGg -3'
miRNA:   3'- gCGCUAGCUGUGACgGCaGCGcUUGC- -5'
17017 5' -55.2 NC_004333.2 + 9190 0.7 0.472222
Target:  5'- uCGCGA-CGGCAgUGUCGaUCGCGGuGCGc -3'
miRNA:   3'- -GCGCUaGCUGUgACGGC-AGCGCU-UGC- -5'
17017 5' -55.2 NC_004333.2 + 33349 0.76 0.212834
Target:  5'- gCGCGAgaaCGGCGC-GCCGUCGUgGAACGc -3'
miRNA:   3'- -GCGCUa--GCUGUGaCGGCAGCG-CUUGC- -5'
17017 5' -55.2 NC_004333.2 + 38423 0.72 0.395688
Target:  5'- gGCGAUCGAgACgcuUGCCG-CGuCGAACu -3'
miRNA:   3'- gCGCUAGCUgUG---ACGGCaGC-GCUUGc -5'
17017 5' -55.2 NC_004333.2 + 15592 0.7 0.4813
Target:  5'- -aCGGUCGcACGCUGCuCGUCggucacgguuucgGCGAACGu -3'
miRNA:   3'- gcGCUAGC-UGUGACG-GCAG-------------CGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 45261 0.7 0.502804
Target:  5'- aGCGcgCGugGC-GCCuuggcUCGCGAACGa -3'
miRNA:   3'- gCGCuaGCugUGaCGGc----AGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 39636 0.75 0.255285
Target:  5'- aGCGGcCGACuGCUGCCGgaCGCGAACu -3'
miRNA:   3'- gCGCUaGCUG-UGACGGCa-GCGCUUGc -5'
17017 5' -55.2 NC_004333.2 + 47471 0.73 0.3438
Target:  5'- aCGCGccggCGGCgACUGCCG-CGCuGAACGa -3'
miRNA:   3'- -GCGCua--GCUG-UGACGGCaGCG-CUUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.