miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17017 5' -55.2 NC_004333.2 + 462 0.72 0.386695
Target:  5'- gGCGcgCGACG-UGCCGgcgagCGUGAACGc -3'
miRNA:   3'- gCGCuaGCUGUgACGGCa----GCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 698 0.74 0.282528
Target:  5'- gCGCGAUCG-UGCcGCCGccCGCGAGCGc -3'
miRNA:   3'- -GCGCUAGCuGUGaCGGCa-GCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 1666 0.67 0.664467
Target:  5'- gCGCGGUCGgaaacaGCGCUuCCGUCGUGcaguACa -3'
miRNA:   3'- -GCGCUAGC------UGUGAcGGCAGCGCu---UGc -5'
17017 5' -55.2 NC_004333.2 + 2447 0.67 0.686205
Target:  5'- uCGCGAUCGGCACguucgcGCCGggCuCGAGa- -3'
miRNA:   3'- -GCGCUAGCUGUGa-----CGGCa-GcGCUUgc -5'
17017 5' -55.2 NC_004333.2 + 2490 0.73 0.312024
Target:  5'- aGaCGAUCGACGCUGCC-UCGagauCGGGCGc -3'
miRNA:   3'- gC-GCUAGCUGUGACGGcAGC----GCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 2923 0.68 0.62509
Target:  5'- aGCGGUCGugACcgucaacgUGCCGcuguagcccugcagcUgCGCGAGCGu -3'
miRNA:   3'- gCGCUAGCugUG--------ACGGC---------------A-GCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 3840 0.67 0.664467
Target:  5'- gGCaGAUCGugAUagccguguUGCCGcCGCaGAACGa -3'
miRNA:   3'- gCG-CUAGCugUG--------ACGGCaGCG-CUUGC- -5'
17017 5' -55.2 NC_004333.2 + 5335 0.66 0.739461
Target:  5'- gCGCugGAUCGuCAC-GCCGcCGUGGAUGc -3'
miRNA:   3'- -GCG--CUAGCuGUGaCGGCaGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 5431 0.66 0.697003
Target:  5'- aGCGucGUCGGCAuCUGCgaaCGCGAACa -3'
miRNA:   3'- gCGC--UAGCUGU-GACGgcaGCGCUUGc -5'
17017 5' -55.2 NC_004333.2 + 5508 0.66 0.707739
Target:  5'- aGaCGAUCGGCGCUGU---UGCGGGCu -3'
miRNA:   3'- gC-GCUAGCUGUGACGgcaGCGCUUGc -5'
17017 5' -55.2 NC_004333.2 + 6019 0.66 0.697003
Target:  5'- uGCGAg-GACGCUGuuGcccucgggCGUGAGCGu -3'
miRNA:   3'- gCGCUagCUGUGACggCa-------GCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 6545 0.66 0.726871
Target:  5'- cCGCGccCGACAauCUGCCGccagagcacgaGCGAGCGc -3'
miRNA:   3'- -GCGCuaGCUGU--GACGGCag---------CGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 7239 0.77 0.196576
Target:  5'- uGCGAcCGACugUGgCGUCGCGAAa- -3'
miRNA:   3'- gCGCUaGCUGugACgGCAGCGCUUgc -5'
17017 5' -55.2 NC_004333.2 + 7485 0.68 0.620712
Target:  5'- gGCGAUCGGguUgguguucuuUGCgGUCGCGAguGCGc -3'
miRNA:   3'- gCGCUAGCUguG---------ACGgCAGCGCU--UGC- -5'
17017 5' -55.2 NC_004333.2 + 8651 0.67 0.641514
Target:  5'- gCGCGGcgcccggcuugcUCGugACggUGCCGUCggcguucagcacgGCGAACGu -3'
miRNA:   3'- -GCGCU------------AGCugUG--ACGGCAG-------------CGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 8942 0.66 0.697003
Target:  5'- uCGCGc-CGGCGCUGuCCaUCGCGuGCGc -3'
miRNA:   3'- -GCGCuaGCUGUGAC-GGcAGCGCuUGC- -5'
17017 5' -55.2 NC_004333.2 + 8947 0.66 0.707739
Target:  5'- uGCGGUCGagcauuGCACgcagcucgGCCGaCGgGAGCGc -3'
miRNA:   3'- gCGCUAGC------UGUGa-------CGGCaGCgCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 9043 0.78 0.158438
Target:  5'- gGUGAUCGGCAagccgaUGCCGUCGCGcAUGu -3'
miRNA:   3'- gCGCUAGCUGUg-----ACGGCAGCGCuUGC- -5'
17017 5' -55.2 NC_004333.2 + 9047 0.68 0.587963
Target:  5'- gGCGAccugCGACACgucgacGCCGaucugCGUGAGCGc -3'
miRNA:   3'- gCGCUa---GCUGUGa-----CGGCa----GCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 9190 0.7 0.472222
Target:  5'- uCGCGA-CGGCAgUGUCGaUCGCGGuGCGc -3'
miRNA:   3'- -GCGCUaGCUGUgACGGC-AGCGCU-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.