miRNA display CGI


Results 1 - 20 of 119 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17018 3' -58.6 NC_004333.2 + 36470 0.66 0.529196
Target:  5'- gACGccAGCaCGCCGCc--CGGCGCUGCGu -3'
miRNA:   3'- -UGC--UUGaGCGGUGcuaGCCGCGGCGU- -5'
17018 3' -58.6 NC_004333.2 + 27939 0.66 0.488052
Target:  5'- cGCGAugUaggccaGUCGCGGUCGauCGCCGCc -3'
miRNA:   3'- -UGCUugAg-----CGGUGCUAGCc-GCGGCGu -5'
17018 3' -58.6 NC_004333.2 + 22230 0.66 0.488052
Target:  5'- cGCGuACUgGCCGCcggcAUCGaCGCCGCGc -3'
miRNA:   3'- -UGCuUGAgCGGUGc---UAGCcGCGGCGU- -5'
17018 3' -58.6 NC_004333.2 + 31165 0.66 0.477999
Target:  5'- cACGAGuCgagCGCgGCGA-CGGCguauGCCGCGa -3'
miRNA:   3'- -UGCUU-Ga--GCGgUGCUaGCCG----CGGCGU- -5'
17018 3' -58.6 NC_004333.2 + 6968 0.66 0.477999
Target:  5'- gGCGAcagguagccCUCGCCACGAgUCGGUuaaaGuuGCGg -3'
miRNA:   3'- -UGCUu--------GAGCGGUGCU-AGCCG----CggCGU- -5'
17018 3' -58.6 NC_004333.2 + 25605 0.66 0.476999
Target:  5'- cCGAugUCGUgACGA-CGGCGgguuucaCCGCGc -3'
miRNA:   3'- uGCUugAGCGgUGCUaGCCGC-------GGCGU- -5'
17018 3' -58.6 NC_004333.2 + 19066 0.66 0.477999
Target:  5'- uACGcagaGACgUCGCCAC--UCGGCGCgGCc -3'
miRNA:   3'- -UGC----UUG-AGCGGUGcuAGCCGCGgCGu -5'
17018 3' -58.6 NC_004333.2 + 3927 0.66 0.477999
Target:  5'- aGCGGcgGCagGCCGaccggcaGGUUGGCGCCGUu -3'
miRNA:   3'- -UGCU--UGagCGGUg------CUAGCCGCGGCGu -5'
17018 3' -58.6 NC_004333.2 + 9279 0.66 0.498204
Target:  5'- uGCGGAUUCGgcuUCACGGUCGGguuuucacCGCCGg- -3'
miRNA:   3'- -UGCUUGAGC---GGUGCUAGCC--------GCGGCgu -5'
17018 3' -58.6 NC_004333.2 + 25998 0.66 0.488052
Target:  5'- cCGAAC-CGCCGC---CGGCcGCCGCc -3'
miRNA:   3'- uGCUUGaGCGGUGcuaGCCG-CGGCGu -5'
17018 3' -58.6 NC_004333.2 + 16612 0.66 0.508449
Target:  5'- cACGAGCUaaGCCAUGG-CaGaCGCCGCGa -3'
miRNA:   3'- -UGCUUGAg-CGGUGCUaGcC-GCGGCGU- -5'
17018 3' -58.6 NC_004333.2 + 16763 0.66 0.508449
Target:  5'- cGCGAagcaaaACgUCGCCACG--CGGCG-CGCAa -3'
miRNA:   3'- -UGCU------UG-AGCGGUGCuaGCCGCgGCGU- -5'
17018 3' -58.6 NC_004333.2 + 31312 0.66 0.528151
Target:  5'- cCGAACagUCGCCcguCGAUCGccuuggccgcgacGCGCUGCu -3'
miRNA:   3'- uGCUUG--AGCGGu--GCUAGC-------------CGCGGCGu -5'
17018 3' -58.6 NC_004333.2 + 8462 0.66 0.528151
Target:  5'- cCGAGCUUGCCGaGGUCgcuugucgucaguGGCGCagGCAg -3'
miRNA:   3'- uGCUUGAGCGGUgCUAG-------------CCGCGg-CGU- -5'
17018 3' -58.6 NC_004333.2 + 33160 0.66 0.518782
Target:  5'- gGCGAguuUCGCgGCG-UCGGCGUCgGCGg -3'
miRNA:   3'- -UGCUug-AGCGgUGCuAGCCGCGG-CGU- -5'
17018 3' -58.6 NC_004333.2 + 29752 0.66 0.518782
Target:  5'- cGCGGugUcgaCGCCGcCGAUCgcgaGGCGuuGCGc -3'
miRNA:   3'- -UGCUugA---GCGGU-GCUAG----CCGCggCGU- -5'
17018 3' -58.6 NC_004333.2 + 6880 0.66 0.518782
Target:  5'- gGCGAGCUCgGCCuCG-UCGaaguCGCCGCc -3'
miRNA:   3'- -UGCUUGAG-CGGuGCuAGCc---GCGGCGu -5'
17018 3' -58.6 NC_004333.2 + 19393 0.66 0.509478
Target:  5'- cGCGAugggaagucgcGC-CGCCGCGAcccgcgcggucgacgCGGCGCuCGCGc -3'
miRNA:   3'- -UGCU-----------UGaGCGGUGCUa--------------GCCGCG-GCGU- -5'
17018 3' -58.6 NC_004333.2 + 45554 0.66 0.508449
Target:  5'- gAUGAAC-CG-CGCGGUCGGUcuGUCGCGc -3'
miRNA:   3'- -UGCUUGaGCgGUGCUAGCCG--CGGCGU- -5'
17018 3' -58.6 NC_004333.2 + 25748 0.66 0.508449
Target:  5'- cGCGuucCUCGgCGgucUGAUCGGUGCgCGCAu -3'
miRNA:   3'- -UGCuu-GAGCgGU---GCUAGCCGCG-GCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.