miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17018 3' -58.6 NC_004333.2 + 38618 1.08 0.000534
Target:  5'- aACGAACUCGCCACGAUCGGCGCCGCAu -3'
miRNA:   3'- -UGCUUGAGCGGUGCUAGCCGCGGCGU- -5'
17018 3' -58.6 NC_004333.2 + 32625 0.79 0.077055
Target:  5'- -gGAGCUCGCCACGAUgGG-GCUGCu -3'
miRNA:   3'- ugCUUGAGCGGUGCUAgCCgCGGCGu -5'
17018 3' -58.6 NC_004333.2 + 17394 0.77 0.091261
Target:  5'- gGCGAACgUCGUCAUGA-CGGuCGCCGCGc -3'
miRNA:   3'- -UGCUUG-AGCGGUGCUaGCC-GCGGCGU- -5'
17018 3' -58.6 NC_004333.2 + 8618 0.76 0.121928
Target:  5'- cCGAcccaUCGUCACGAaagucgacgucaacaUCGGCGCCGCAa -3'
miRNA:   3'- uGCUug--AGCGGUGCU---------------AGCCGCGGCGU- -5'
17018 3' -58.6 NC_004333.2 + 36075 0.76 0.123963
Target:  5'- gACGAGCUgGCC-CGugacgCGGCGCUGCGc -3'
miRNA:   3'- -UGCUUGAgCGGuGCua---GCCGCGGCGU- -5'
17018 3' -58.6 NC_004333.2 + 2107 0.75 0.134617
Target:  5'- cGCGAGCaUCGCCuCGAacUCGGCGCguUGCAa -3'
miRNA:   3'- -UGCUUG-AGCGGuGCU--AGCCGCG--GCGU- -5'
17018 3' -58.6 NC_004333.2 + 20242 0.75 0.142181
Target:  5'- cGCG-ACUgGCCuACGAUC-GCGCCGCAc -3'
miRNA:   3'- -UGCuUGAgCGG-UGCUAGcCGCGGCGU- -5'
17018 3' -58.6 NC_004333.2 + 39475 0.74 0.154258
Target:  5'- uCGAGCggCGUCACGGUCGGCacguucGCCGUg -3'
miRNA:   3'- uGCUUGa-GCGGUGCUAGCCG------CGGCGu -5'
17018 3' -58.6 NC_004333.2 + 32906 0.74 0.158486
Target:  5'- uUGAACUCcgaucCCGCGA-CGGUGCCGCGa -3'
miRNA:   3'- uGCUUGAGc----GGUGCUaGCCGCGGCGU- -5'
17018 3' -58.6 NC_004333.2 + 1254 0.73 0.176462
Target:  5'- cGCGAGgcUUCGCgGCGcucgCGGCGCUGCAg -3'
miRNA:   3'- -UGCUU--GAGCGgUGCua--GCCGCGGCGU- -5'
17018 3' -58.6 NC_004333.2 + 29619 0.73 0.181231
Target:  5'- uCGGAUUCGCCGCcgcgcCGGCuGCCGCAc -3'
miRNA:   3'- uGCUUGAGCGGUGcua--GCCG-CGGCGU- -5'
17018 3' -58.6 NC_004333.2 + 39860 0.73 0.186114
Target:  5'- gACGAAC-C-CCAUGA-CGGCGCCGUAc -3'
miRNA:   3'- -UGCUUGaGcGGUGCUaGCCGCGGCGU- -5'
17018 3' -58.6 NC_004333.2 + 39183 0.73 0.196228
Target:  5'- cGCGAA--CGCCGCG-UCGGuCGCCGCc -3'
miRNA:   3'- -UGCUUgaGCGGUGCuAGCC-GCGGCGu -5'
17018 3' -58.6 NC_004333.2 + 10014 0.73 0.201463
Target:  5'- uGCGAGCggcgUGCCAaGAUCGGCgGCCGgGu -3'
miRNA:   3'- -UGCUUGa---GCGGUgCUAGCCG-CGGCgU- -5'
17018 3' -58.6 NC_004333.2 + 19550 0.72 0.206819
Target:  5'- gAUGGGCgccggUCG-CACGGUCGGCGCgGCAc -3'
miRNA:   3'- -UGCUUG-----AGCgGUGCUAGCCGCGgCGU- -5'
17018 3' -58.6 NC_004333.2 + 30295 0.72 0.217901
Target:  5'- gGCGAGCUgGCCGCcGUCG-CGCCuGCGa -3'
miRNA:   3'- -UGCUUGAgCGGUGcUAGCcGCGG-CGU- -5'
17018 3' -58.6 NC_004333.2 + 26056 0.72 0.217901
Target:  5'- cCGGAUUUGCCAg---UGGCGCCGCAg -3'
miRNA:   3'- uGCUUGAGCGGUgcuaGCCGCGGCGU- -5'
17018 3' -58.6 NC_004333.2 + 18174 0.72 0.217901
Target:  5'- gACGAGCggCGCCgcauggugcucGCGcUCGGCGCCGg- -3'
miRNA:   3'- -UGCUUGa-GCGG-----------UGCuAGCCGCGGCgu -5'
17018 3' -58.6 NC_004333.2 + 29887 0.72 0.217901
Target:  5'- gGCGAAg-CGCUgcGCGAUCGG-GCCGCGc -3'
miRNA:   3'- -UGCUUgaGCGG--UGCUAGCCgCGGCGU- -5'
17018 3' -58.6 NC_004333.2 + 45461 0.72 0.22363
Target:  5'- cACGAACaacuUCGCCGacgaGAUCGGCcugucgGCCGCc -3'
miRNA:   3'- -UGCUUG----AGCGGUg---CUAGCCG------CGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.