miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17018 3' -58.6 NC_004333.2 + 36075 0.76 0.123963
Target:  5'- gACGAGCUgGCC-CGugacgCGGCGCUGCGc -3'
miRNA:   3'- -UGCUUGAgCGGuGCua---GCCGCGGCGU- -5'
17018 3' -58.6 NC_004333.2 + 45017 0.69 0.341498
Target:  5'- cCGGccGCUCGaCCGCGcgUGGCGCUgGCGg -3'
miRNA:   3'- uGCU--UGAGC-GGUGCuaGCCGCGG-CGU- -5'
17018 3' -58.6 NC_004333.2 + 30391 0.69 0.341498
Target:  5'- cCGAACgUCGaaGCGAcCGGCGCCGg- -3'
miRNA:   3'- uGCUUG-AGCggUGCUaGCCGCGGCgu -5'
17018 3' -58.6 NC_004333.2 + 33006 0.66 0.529196
Target:  5'- gGCGAuAC-CGCUAUcggGAUCGGCGUCGa- -3'
miRNA:   3'- -UGCU-UGaGCGGUG---CUAGCCGCGGCgu -5'
17018 3' -58.6 NC_004333.2 + 39860 0.73 0.186114
Target:  5'- gACGAAC-C-CCAUGA-CGGCGCCGUAc -3'
miRNA:   3'- -UGCUUGaGcGGUGCUaGCCGCGGCGU- -5'
17018 3' -58.6 NC_004333.2 + 19550 0.72 0.206819
Target:  5'- gAUGGGCgccggUCG-CACGGUCGGCGCgGCAc -3'
miRNA:   3'- -UGCUUG-----AGCgGUGCUAGCCGCGgCGU- -5'
17018 3' -58.6 NC_004333.2 + 30295 0.72 0.217901
Target:  5'- gGCGAGCUgGCCGCcGUCG-CGCCuGCGa -3'
miRNA:   3'- -UGCUUGAgCGGUGcUAGCcGCGG-CGU- -5'
17018 3' -58.6 NC_004333.2 + 29887 0.72 0.217901
Target:  5'- gGCGAAg-CGCUgcGCGAUCGG-GCCGCGc -3'
miRNA:   3'- -UGCUUgaGCGG--UGCUAGCCgCGGCGU- -5'
17018 3' -58.6 NC_004333.2 + 45378 0.71 0.247836
Target:  5'- gACGAAagaccagCGCCA-GGUCGGCaagGCCGCAg -3'
miRNA:   3'- -UGCUUga-----GCGGUgCUAGCCG---CGGCGU- -5'
17018 3' -58.6 NC_004333.2 + 19713 0.69 0.333458
Target:  5'- cGCGuGCUCGgCGCuGGUggcgugcaagaCGGCGCCGCu -3'
miRNA:   3'- -UGCuUGAGCgGUG-CUA-----------GCCGCGGCGu -5'
17018 3' -58.6 NC_004333.2 + 38779 0.71 0.267382
Target:  5'- cCGAGCUUGCCGaaauGUCcggcauggGGCGCCGCGa -3'
miRNA:   3'- uGCUUGAGCGGUgc--UAG--------CCGCGGCGU- -5'
17018 3' -58.6 NC_004333.2 + 42943 0.72 0.22363
Target:  5'- gUGGGCUCGCCGgGAU--GCGCUGCAa -3'
miRNA:   3'- uGCUUGAGCGGUgCUAgcCGCGGCGU- -5'
17018 3' -58.6 NC_004333.2 + 2107 0.75 0.134617
Target:  5'- cGCGAGCaUCGCCuCGAacUCGGCGCguUGCAa -3'
miRNA:   3'- -UGCUUG-AGCGGuGCU--AGCCGCG--GCGU- -5'
17018 3' -58.6 NC_004333.2 + 12351 0.7 0.310178
Target:  5'- cACG--UUCGCgACGGUCgggGGCGCCGUAg -3'
miRNA:   3'- -UGCuuGAGCGgUGCUAG---CCGCGGCGU- -5'
17018 3' -58.6 NC_004333.2 + 20242 0.75 0.142181
Target:  5'- cGCG-ACUgGCCuACGAUC-GCGCCGCAc -3'
miRNA:   3'- -UGCuUGAgCGG-UGCUAGcCGCGGCGU- -5'
17018 3' -58.6 NC_004333.2 + 159 0.72 0.22363
Target:  5'- cGCGAGCa---CACGAUCGGCGCCugGCGc -3'
miRNA:   3'- -UGCUUGagcgGUGCUAGCCGCGG--CGU- -5'
17018 3' -58.6 NC_004333.2 + 47704 0.7 0.310178
Target:  5'- gACGAagcguucacGCUCGCCggcACG-UCGcGCGCCGUg -3'
miRNA:   3'- -UGCU---------UGAGCGG---UGCuAGC-CGCGGCGu -5'
17018 3' -58.6 NC_004333.2 + 1108 0.69 0.341498
Target:  5'- cACGucgcAgUCGCgCGCGAagUCGGUGCCGUg -3'
miRNA:   3'- -UGCu---UgAGCG-GUGCU--AGCCGCGGCGu -5'
17018 3' -58.6 NC_004333.2 + 32906 0.74 0.158486
Target:  5'- uUGAACUCcgaucCCGCGA-CGGUGCCGCGa -3'
miRNA:   3'- uGCUUGAGc----GGUGCUaGCCGCGGCGU- -5'
17018 3' -58.6 NC_004333.2 + 26056 0.72 0.217901
Target:  5'- cCGGAUUUGCCAg---UGGCGCCGCAg -3'
miRNA:   3'- uGCUUGAGCGGUgcuaGCCGCGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.