miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17018 5' -53.5 NC_004333.2 + 38653 1.09 0.001274
Target:  5'- gCUCGUCGAGCAAAACGCGCAAGCCCAu -3'
miRNA:   3'- -GAGCAGCUCGUUUUGCGCGUUCGGGU- -5'
17018 5' -53.5 NC_004333.2 + 27329 0.79 0.159875
Target:  5'- -gCGuUCGAGCAGGAUGCGCGGccGCCCGu -3'
miRNA:   3'- gaGC-AGCUCGUUUUGCGCGUU--CGGGU- -5'
17018 5' -53.5 NC_004333.2 + 43372 0.77 0.210918
Target:  5'- -aCGUCGAGCAuggGAACGCGCAaucgcuauGGuCCCGc -3'
miRNA:   3'- gaGCAGCUCGU---UUUGCGCGU--------UC-GGGU- -5'
17018 5' -53.5 NC_004333.2 + 16529 0.73 0.346077
Target:  5'- uCUCGggccgCGAGC-GGugGCGCAAcuGCCCGg -3'
miRNA:   3'- -GAGCa----GCUCGuUUugCGCGUU--CGGGU- -5'
17018 5' -53.5 NC_004333.2 + 45950 0.73 0.363452
Target:  5'- gCUCGUCGAGCGGAuguguCGCGgCGAGgcgugguguCCCGg -3'
miRNA:   3'- -GAGCAGCUCGUUUu----GCGC-GUUC---------GGGU- -5'
17018 5' -53.5 NC_004333.2 + 31114 0.73 0.363452
Target:  5'- -gCGgcgCGAGUugcugcucGCGCGCGAGCCCGg -3'
miRNA:   3'- gaGCa--GCUCGuuu-----UGCGCGUUCGGGU- -5'
17018 5' -53.5 NC_004333.2 + 8639 0.73 0.363452
Target:  5'- -aCGUCGAGCucGGCGCGgc-GCCCGg -3'
miRNA:   3'- gaGCAGCUCGuuUUGCGCguuCGGGU- -5'
17018 5' -53.5 NC_004333.2 + 30488 0.73 0.372363
Target:  5'- cCUUGUCGAGCccGAGCGUGC-GGCCg- -3'
miRNA:   3'- -GAGCAGCUCGu-UUUGCGCGuUCGGgu -5'
17018 5' -53.5 NC_004333.2 + 6411 0.72 0.390627
Target:  5'- cCUCGcUCGuGCAGAcccauagcccgGCGCGCGAgucGCCCGc -3'
miRNA:   3'- -GAGC-AGCuCGUUU-----------UGCGCGUU---CGGGU- -5'
17018 5' -53.5 NC_004333.2 + 28266 0.72 0.390627
Target:  5'- gUCGUCGAugauGCGGAcgGCGCGgauGGCCCAg -3'
miRNA:   3'- gAGCAGCU----CGUUU--UGCGCgu-UCGGGU- -5'
17018 5' -53.5 NC_004333.2 + 13857 0.72 0.419095
Target:  5'- -gCGUCGAGCGcauuGAGCGCGCcgcGCCg- -3'
miRNA:   3'- gaGCAGCUCGU----UUUGCGCGuu-CGGgu -5'
17018 5' -53.5 NC_004333.2 + 1861 0.72 0.419095
Target:  5'- -gUGUCGuGCGGuucuGACGCGCcuGGCCCGg -3'
miRNA:   3'- gaGCAGCuCGUU----UUGCGCGu-UCGGGU- -5'
17018 5' -53.5 NC_004333.2 + 24459 0.71 0.469213
Target:  5'- -aCGUcCGAcGCAAcuCGCGCGAGCCa- -3'
miRNA:   3'- gaGCA-GCU-CGUUuuGCGCGUUCGGgu -5'
17018 5' -53.5 NC_004333.2 + 4517 0.71 0.475433
Target:  5'- -cCGUCGAGCuuguugcgauccuGGugGUGCAGGCCgGa -3'
miRNA:   3'- gaGCAGCUCGu------------UUugCGCGUUCGGgU- -5'
17018 5' -53.5 NC_004333.2 + 539 0.71 0.479603
Target:  5'- aCUCGaCGuAGCcuugcacguucAGGGCGCGCAGGCCUu -3'
miRNA:   3'- -GAGCaGC-UCG-----------UUUUGCGCGUUCGGGu -5'
17018 5' -53.5 NC_004333.2 + 34180 0.71 0.479603
Target:  5'- -cCGUCGAaacGCAAAgaaGCGCGCGcAGCUCGc -3'
miRNA:   3'- gaGCAGCU---CGUUU---UGCGCGU-UCGGGU- -5'
17018 5' -53.5 NC_004333.2 + 32733 0.71 0.490105
Target:  5'- -cCGgCGAGCAGAacgucACGCGCAGGUCg- -3'
miRNA:   3'- gaGCaGCUCGUUU-----UGCGCGUUCGGgu -5'
17018 5' -53.5 NC_004333.2 + 12630 0.71 0.490105
Target:  5'- gUCGUCGAguucGCGAAGCGCGUuccauuGCCa- -3'
miRNA:   3'- gAGCAGCU----CGUUUUGCGCGuu----CGGgu -5'
17018 5' -53.5 NC_004333.2 + 17050 0.7 0.500712
Target:  5'- uUCGcCGGGCuc-GCGCGCGAGCagCAa -3'
miRNA:   3'- gAGCaGCUCGuuuUGCGCGUUCGg-GU- -5'
17018 5' -53.5 NC_004333.2 + 15760 0.7 0.510345
Target:  5'- aCUCGUC-AGCGAgcugcgcGAgGCGCGGGCCg- -3'
miRNA:   3'- -GAGCAGcUCGUU-------UUgCGCGUUCGGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.