miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17018 5' -53.5 NC_004333.2 + 154 0.67 0.690007
Target:  5'- uUCGgcgCGAGCAcacGAUcggcgccugGCGCGAGUCCAc -3'
miRNA:   3'- gAGCa--GCUCGUu--UUG---------CGCGUUCGGGU- -5'
17018 5' -53.5 NC_004333.2 + 393 0.66 0.765979
Target:  5'- gUUGcCGAGCGcguaGAGCGCGCGAuCCUu -3'
miRNA:   3'- gAGCaGCUCGU----UUUGCGCGUUcGGGu -5'
17018 5' -53.5 NC_004333.2 + 539 0.71 0.479603
Target:  5'- aCUCGaCGuAGCcuugcacguucAGGGCGCGCAGGCCUu -3'
miRNA:   3'- -GAGCaGC-UCG-----------UUUUGCGCGUUCGGGu -5'
17018 5' -53.5 NC_004333.2 + 1861 0.72 0.419095
Target:  5'- -gUGUCGuGCGGuucuGACGCGCcuGGCCCGg -3'
miRNA:   3'- gaGCAGCuCGUU----UUGCGCGu-UCGGGU- -5'
17018 5' -53.5 NC_004333.2 + 2045 0.7 0.51142
Target:  5'- -aCGUCGAcGCcc-GCGCGauaGAGCCCGg -3'
miRNA:   3'- gaGCAGCU-CGuuuUGCGCg--UUCGGGU- -5'
17018 5' -53.5 NC_004333.2 + 2240 0.66 0.765979
Target:  5'- gCUCGaCGAGCugcuucuCGCGCAacgcGGCCa- -3'
miRNA:   3'- -GAGCaGCUCGuuuu---GCGCGU----UCGGgu -5'
17018 5' -53.5 NC_004333.2 + 2263 0.68 0.667588
Target:  5'- gUUGuUCGAGCGcAGCGCGUuuGCCg- -3'
miRNA:   3'- gAGC-AGCUCGUuUUGCGCGuuCGGgu -5'
17018 5' -53.5 NC_004333.2 + 3716 0.67 0.701135
Target:  5'- uCUgGUUGAGCGccuCGCGCAccCCCGg -3'
miRNA:   3'- -GAgCAGCUCGUuuuGCGCGUucGGGU- -5'
17018 5' -53.5 NC_004333.2 + 4517 0.71 0.475433
Target:  5'- -cCGUCGAGCuuguugcgauccuGGugGUGCAGGCCgGa -3'
miRNA:   3'- gaGCAGCUCGu------------UUugCGCGUUCGGgU- -5'
17018 5' -53.5 NC_004333.2 + 4599 0.66 0.77635
Target:  5'- aCUCGcguUCGAGgcGAGCGCGCGAcacGCCa- -3'
miRNA:   3'- -GAGC---AGCUCguUUUGCGCGUU---CGGgu -5'
17018 5' -53.5 NC_004333.2 + 4657 0.69 0.577387
Target:  5'- -gCGaCGGGCAGgccGGCGCGCGGGUCUu -3'
miRNA:   3'- gaGCaGCUCGUU---UUGCGCGUUCGGGu -5'
17018 5' -53.5 NC_004333.2 + 5161 0.67 0.712191
Target:  5'- gUUGUCGAGCA--GCGCaGCuugcGCCUg -3'
miRNA:   3'- gAGCAGCUCGUuuUGCG-CGuu--CGGGu -5'
17018 5' -53.5 NC_004333.2 + 5208 0.68 0.643899
Target:  5'- gCUCGUCcgccGGCGAgggugcggguugcAGCGCaucccgGCGAGCCCAc -3'
miRNA:   3'- -GAGCAGc---UCGUU-------------UUGCG------CGUUCGGGU- -5'
17018 5' -53.5 NC_004333.2 + 6411 0.72 0.390627
Target:  5'- cCUCGcUCGuGCAGAcccauagcccgGCGCGCGAgucGCCCGc -3'
miRNA:   3'- -GAGC-AGCuCGUUU-----------UGCGCGUU---CGGGU- -5'
17018 5' -53.5 NC_004333.2 + 6572 0.67 0.678821
Target:  5'- ----aCGAGC-GAGCGCGUggGCCgCAg -3'
miRNA:   3'- gagcaGCUCGuUUUGCGCGuuCGG-GU- -5'
17018 5' -53.5 NC_004333.2 + 6661 0.69 0.588597
Target:  5'- gCUCGgcgcgcUCGAGC-AGGCGCGCAuccGCCg- -3'
miRNA:   3'- -GAGC------AGCUCGuUUUGCGCGUu--CGGgu -5'
17018 5' -53.5 NC_004333.2 + 6749 0.66 0.762839
Target:  5'- -gCGUCGAGCAGcGCcuguucgaucauguGCGCGuGCUCGa -3'
miRNA:   3'- gaGCAGCUCGUUuUG--------------CGCGUuCGGGU- -5'
17018 5' -53.5 NC_004333.2 + 8639 0.73 0.363452
Target:  5'- -aCGUCGAGCucGGCGCGgc-GCCCGg -3'
miRNA:   3'- gaGCAGCUCGuuUUGCGCguuCGGGU- -5'
17018 5' -53.5 NC_004333.2 + 8950 0.66 0.755462
Target:  5'- --gGUCGAGCAuuGCaCGC-AGCUCGg -3'
miRNA:   3'- gagCAGCUCGUuuUGcGCGuUCGGGU- -5'
17018 5' -53.5 NC_004333.2 + 10436 0.7 0.544078
Target:  5'- gCUCGUCGAuCu---CGCGCAGGCgCGg -3'
miRNA:   3'- -GAGCAGCUcGuuuuGCGCGUUCGgGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.