miRNA display CGI


Results 1 - 20 of 83 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17018 5' -53.5 NC_004333.2 + 43372 0.77 0.210918
Target:  5'- -aCGUCGAGCAuggGAACGCGCAaucgcuauGGuCCCGc -3'
miRNA:   3'- gaGCAGCUCGU---UUUGCGCGU--------UC-GGGU- -5'
17018 5' -53.5 NC_004333.2 + 4657 0.69 0.577387
Target:  5'- -gCGaCGGGCAGgccGGCGCGCGGGUCUu -3'
miRNA:   3'- gaGCaGCUCGUU---UUGCGCGUUCGGGu -5'
17018 5' -53.5 NC_004333.2 + 37683 0.69 0.577387
Target:  5'- gCUCGUCGgccGGCccGGCGCGUGgcGGCUCAa -3'
miRNA:   3'- -GAGCAGC---UCGuuUUGCGCGU--UCGGGU- -5'
17018 5' -53.5 NC_004333.2 + 19799 0.66 0.780456
Target:  5'- -gCGUUGAGUgcGAUGCGCugcugaccgaugccGGCCCGa -3'
miRNA:   3'- gaGCAGCUCGuuUUGCGCGu-------------UCGGGU- -5'
17018 5' -53.5 NC_004333.2 + 45950 0.73 0.363452
Target:  5'- gCUCGUCGAGCGGAuguguCGCGgCGAGgcgugguguCCCGg -3'
miRNA:   3'- -GAGCAGCUCGUUUu----GCGC-GUUC---------GGGU- -5'
17018 5' -53.5 NC_004333.2 + 30488 0.73 0.372363
Target:  5'- cCUUGUCGAGCccGAGCGUGC-GGCCg- -3'
miRNA:   3'- -GAGCAGCUCGu-UUUGCGCGuUCGGgu -5'
17018 5' -53.5 NC_004333.2 + 1861 0.72 0.419095
Target:  5'- -gUGUCGuGCGGuucuGACGCGCcuGGCCCGg -3'
miRNA:   3'- gaGCAGCuCGUU----UUGCGCGu-UCGGGU- -5'
17018 5' -53.5 NC_004333.2 + 539 0.71 0.479603
Target:  5'- aCUCGaCGuAGCcuugcacguucAGGGCGCGCAGGCCUu -3'
miRNA:   3'- -GAGCaGC-UCG-----------UUUUGCGCGUUCGGGu -5'
17018 5' -53.5 NC_004333.2 + 36184 0.7 0.51142
Target:  5'- ----aCGAGCAcgAGAUuggGCGCAAGCCCGa -3'
miRNA:   3'- gagcaGCUCGU--UUUG---CGCGUUCGGGU- -5'
17018 5' -53.5 NC_004333.2 + 22003 0.7 0.544078
Target:  5'- -gCGUCGGcGCGAAucaGCGCGCGGGCg-- -3'
miRNA:   3'- gaGCAGCU-CGUUU---UGCGCGUUCGggu -5'
17018 5' -53.5 NC_004333.2 + 17170 0.7 0.522221
Target:  5'- -gCGUCGA-CAAGGcCGCuGCGAGCCCc -3'
miRNA:   3'- gaGCAGCUcGUUUU-GCG-CGUUCGGGu -5'
17018 5' -53.5 NC_004333.2 + 12630 0.71 0.490105
Target:  5'- gUCGUCGAguucGCGAAGCGCGUuccauuGCCa- -3'
miRNA:   3'- gAGCAGCU----CGUUUUGCGCGuu----CGGgu -5'
17018 5' -53.5 NC_004333.2 + 16529 0.73 0.346077
Target:  5'- uCUCGggccgCGAGC-GGugGCGCAAcuGCCCGg -3'
miRNA:   3'- -GAGCa----GCUCGuUUugCGCGUU--CGGGU- -5'
17018 5' -53.5 NC_004333.2 + 29881 0.7 0.522221
Target:  5'- gUCGUCG-GCGAAGCGCuGCGcgaucgGGCCg- -3'
miRNA:   3'- gAGCAGCuCGUUUUGCG-CGU------UCGGgu -5'
17018 5' -53.5 NC_004333.2 + 8639 0.73 0.363452
Target:  5'- -aCGUCGAGCucGGCGCGgc-GCCCGg -3'
miRNA:   3'- gaGCAGCUCGuuUUGCGCguuCGGGU- -5'
17018 5' -53.5 NC_004333.2 + 32733 0.71 0.490105
Target:  5'- -cCGgCGAGCAGAacgucACGCGCAGGUCg- -3'
miRNA:   3'- gaGCaGCUCGUUU-----UGCGCGUUCGGgu -5'
17018 5' -53.5 NC_004333.2 + 15073 0.7 0.525479
Target:  5'- cCUUGUUGcccuugaaaccaaucAGCGAAACGUGCGggaacacGGCCCGa -3'
miRNA:   3'- -GAGCAGC---------------UCGUUUUGCGCGU-------UCGGGU- -5'
17018 5' -53.5 NC_004333.2 + 30279 0.69 0.577387
Target:  5'- gUCGUCGAGUuucGACG-GCGAGCUg- -3'
miRNA:   3'- gAGCAGCUCGuu-UUGCgCGUUCGGgu -5'
17018 5' -53.5 NC_004333.2 + 31114 0.73 0.363452
Target:  5'- -gCGgcgCGAGUugcugcucGCGCGCGAGCCCGg -3'
miRNA:   3'- gaGCa--GCUCGuuu-----UGCGCGUUCGGGU- -5'
17018 5' -53.5 NC_004333.2 + 13857 0.72 0.419095
Target:  5'- -gCGUCGAGCGcauuGAGCGCGCcgcGCCg- -3'
miRNA:   3'- gaGCAGCUCGU----UUUGCGCGuu-CGGgu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.