miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17019 5' -58.1 NC_004333.2 + 38423 1.12 0.000317
Target:  5'- cUCGUUGACGACGGGCGCGCAUCCGGCg -3'
miRNA:   3'- -AGCAACUGCUGCCCGCGCGUAGGCCG- -5'
17019 5' -58.1 NC_004333.2 + 36122 0.77 0.108
Target:  5'- -gGUUGGCGACGGcCuGCGCGaCCGGCg -3'
miRNA:   3'- agCAACUGCUGCCcG-CGCGUaGGCCG- -5'
17019 5' -58.1 NC_004333.2 + 20723 0.76 0.134519
Target:  5'- gCGgUGAUGACGGcGCGCGCGcugCCGGa -3'
miRNA:   3'- aGCaACUGCUGCC-CGCGCGUa--GGCCg -5'
17019 5' -58.1 NC_004333.2 + 13839 0.75 0.158214
Target:  5'- -gGUUcGACGACGGGCGCcGCGUCgaGcGCa -3'
miRNA:   3'- agCAA-CUGCUGCCCGCG-CGUAGg-C-CG- -5'
17019 5' -58.1 NC_004333.2 + 19707 0.75 0.162512
Target:  5'- gCGUUG-CGACuGuGGCGCGCGUaaCUGGCg -3'
miRNA:   3'- aGCAACuGCUG-C-CCGCGCGUA--GGCCG- -5'
17019 5' -58.1 NC_004333.2 + 47212 0.74 0.176044
Target:  5'- gUCGcc-GCGACGGGCGCGCuacuUUCGaGCg -3'
miRNA:   3'- -AGCaacUGCUGCCCGCGCGu---AGGC-CG- -5'
17019 5' -58.1 NC_004333.2 + 24110 0.73 0.206138
Target:  5'- gCGUUGAuCGACGGacagucgcaGCGCGCAauguUCgCGGCc -3'
miRNA:   3'- aGCAACU-GCUGCC---------CGCGCGU----AG-GCCG- -5'
17019 5' -58.1 NC_004333.2 + 48081 0.73 0.213772
Target:  5'- cUCGgugccGACGAggcgcaggcggcaacCGGGCGCGCGcaccgcgCCGGCa -3'
miRNA:   3'- -AGCaa---CUGCU---------------GCCCGCGCGUa------GGCCG- -5'
17019 5' -58.1 NC_004333.2 + 28438 0.73 0.222794
Target:  5'- gUCGUUGACGGCaGcGGCGC-CGUCUuGCa -3'
miRNA:   3'- -AGCAACUGCUG-C-CCGCGcGUAGGcCG- -5'
17019 5' -58.1 NC_004333.2 + 27412 0.72 0.24304
Target:  5'- gCGUgu-CGACGuucaGGCGCGCAgccgcgucggcgaugUCCGGCa -3'
miRNA:   3'- aGCAacuGCUGC----CCGCGCGU---------------AGGCCG- -5'
17019 5' -58.1 NC_004333.2 + 38545 0.72 0.259537
Target:  5'- ----gGGCG-CaGGCGCGCcgCCGGCa -3'
miRNA:   3'- agcaaCUGCuGcCCGCGCGuaGGCCG- -5'
17019 5' -58.1 NC_004333.2 + 43434 0.72 0.262155
Target:  5'- gUCGgugaaagcUGGCGugcucGCGGGCGCGacguaucccgaugaGUCCGGCa -3'
miRNA:   3'- -AGCa-------ACUGC-----UGCCCGCGCg-------------UAGGCCG- -5'
17019 5' -58.1 NC_004333.2 + 25610 0.71 0.301078
Target:  5'- gUCG-UGACGACGGcggguuucaccGCGCGCucgucgCuCGGCa -3'
miRNA:   3'- -AGCaACUGCUGCC-----------CGCGCGua----G-GCCG- -5'
17019 5' -58.1 NC_004333.2 + 655 0.71 0.31148
Target:  5'- gCGUUGGCGAgugcauucaauguacUGGuCGCGCcggCCGGCg -3'
miRNA:   3'- aGCAACUGCU---------------GCCcGCGCGua-GGCCG- -5'
17019 5' -58.1 NC_004333.2 + 18350 0.7 0.316022
Target:  5'- gUCGacUGGCGGCGcGGCGaucaGCAUCaaCGGCc -3'
miRNA:   3'- -AGCa-ACUGCUGC-CCGCg---CGUAG--GCCG- -5'
17019 5' -58.1 NC_004333.2 + 5209 0.7 0.323701
Target:  5'- cUCGUccgccGGCGaggguGCGGGUugcaGCGCAUCCcGGCg -3'
miRNA:   3'- -AGCAa----CUGC-----UGCCCG----CGCGUAGG-CCG- -5'
17019 5' -58.1 NC_004333.2 + 2370 0.7 0.331518
Target:  5'- -aGUUGAuCGACGcGGCGUagcccaugacgGCG-CCGGCg -3'
miRNA:   3'- agCAACU-GCUGC-CCGCG-----------CGUaGGCCG- -5'
17019 5' -58.1 NC_004333.2 + 43431 0.7 0.355796
Target:  5'- cUCGggucgGGCuGACGGacGCGCGCAUCgCGcGCu -3'
miRNA:   3'- -AGCaa---CUG-CUGCC--CGCGCGUAG-GC-CG- -5'
17019 5' -58.1 NC_004333.2 + 14160 0.7 0.355796
Target:  5'- uUCGUUGACGACcGGCcCGaugCCGGg -3'
miRNA:   3'- -AGCAACUGCUGcCCGcGCguaGGCCg -5'
17019 5' -58.1 NC_004333.2 + 46163 0.69 0.364162
Target:  5'- gCGgccgUGACGuCGGGCaucaucCGCG-CCGGCg -3'
miRNA:   3'- aGCa---ACUGCuGCCCGc-----GCGUaGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.