miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17019 5' -58.1 NC_004333.2 + 71 0.69 0.407991
Target:  5'- ----cGGCG-CGGuGCGCGCGcCCGGUu -3'
miRNA:   3'- agcaaCUGCuGCC-CGCGCGUaGGCCG- -5'
17019 5' -58.1 NC_004333.2 + 443 0.67 0.50473
Target:  5'- cCGgggUGuACGAgGccacGGCGCGCGacgugCCGGCg -3'
miRNA:   3'- aGCa--AC-UGCUgC----CCGCGCGUa----GGCCG- -5'
17019 5' -58.1 NC_004333.2 + 655 0.71 0.31148
Target:  5'- gCGUUGGCGAgugcauucaauguacUGGuCGCGCcggCCGGCg -3'
miRNA:   3'- aGCAACUGCU---------------GCCcGCGCGua-GGCCG- -5'
17019 5' -58.1 NC_004333.2 + 1037 0.67 0.514967
Target:  5'- aUCGggGACGAac-GCGaUGuCAUCCGGCc -3'
miRNA:   3'- -AGCaaCUGCUgccCGC-GC-GUAGGCCG- -5'
17019 5' -58.1 NC_004333.2 + 2370 0.7 0.331518
Target:  5'- -aGUUGAuCGACGcGGCGUagcccaugacgGCG-CCGGCg -3'
miRNA:   3'- agCAACU-GCUGC-CCGCG-----------CGUaGGCCG- -5'
17019 5' -58.1 NC_004333.2 + 4654 0.67 0.50473
Target:  5'- ---aUGGCGACGGGCaggccgGCGCG-CgGGUc -3'
miRNA:   3'- agcaACUGCUGCCCG------CGCGUaGgCCG- -5'
17019 5' -58.1 NC_004333.2 + 5209 0.7 0.323701
Target:  5'- cUCGUccgccGGCGaggguGCGGGUugcaGCGCAUCCcGGCg -3'
miRNA:   3'- -AGCAa----CUGC-----UGCCCG----CGCGUAGG-CCG- -5'
17019 5' -58.1 NC_004333.2 + 6662 0.66 0.546155
Target:  5'- cUCGgcGcgcuCGAgCaGGCGCGCAUCCGccGCu -3'
miRNA:   3'- -AGCaaCu---GCU-GcCCGCGCGUAGGC--CG- -5'
17019 5' -58.1 NC_004333.2 + 9299 0.67 0.494581
Target:  5'- ----cGGCG-CGGGUGCGCGgacgggCGGCg -3'
miRNA:   3'- agcaaCUGCuGCCCGCGCGUag----GCCG- -5'
17019 5' -58.1 NC_004333.2 + 9630 0.66 0.535686
Target:  5'- cCGgcUGcCGGCGGcGCGCcuGCGcCCGGCu -3'
miRNA:   3'- aGCa-ACuGCUGCC-CGCG--CGUaGGCCG- -5'
17019 5' -58.1 NC_004333.2 + 9941 0.67 0.484527
Target:  5'- aCGUUGACGaacgGCGcGGCGCGCuugcucgacUCgGGg -3'
miRNA:   3'- aGCAACUGC----UGC-CCGCGCGu--------AGgCCg -5'
17019 5' -58.1 NC_004333.2 + 10506 0.69 0.367546
Target:  5'- cCGgccGACGAgcggguCGGGCGCGCgcucgaugaaugucuGaUCCGGCg -3'
miRNA:   3'- aGCaa-CUGCU------GCCCGCGCG---------------U-AGGCCG- -5'
17019 5' -58.1 NC_004333.2 + 10799 0.66 0.56728
Target:  5'- aCGaUGAgGACGGcCGCGCGaCgCGGUg -3'
miRNA:   3'- aGCaACUgCUGCCcGCGCGUaG-GCCG- -5'
17019 5' -58.1 NC_004333.2 + 10953 0.66 0.525288
Target:  5'- uUCGUUGGUG-CGGGCcacagcgucGCGCGgaacUCGGCa -3'
miRNA:   3'- -AGCAACUGCuGCCCG---------CGCGUa---GGCCG- -5'
17019 5' -58.1 NC_004333.2 + 11217 0.66 0.535686
Target:  5'- aCG-UGAUu-CGGGCGCGgCuccuugCCGGCg -3'
miRNA:   3'- aGCaACUGcuGCCCGCGC-Gua----GGCCG- -5'
17019 5' -58.1 NC_004333.2 + 11344 0.66 0.535686
Target:  5'- gCGgccGGCGAUGGccguaGCGCGCAcucgaCGGCa -3'
miRNA:   3'- aGCaa-CUGCUGCC-----CGCGCGUag---GCCG- -5'
17019 5' -58.1 NC_004333.2 + 11698 0.67 0.494581
Target:  5'- cCGUcGACGcagcgcCGGGCG-GCGUgCUGGCg -3'
miRNA:   3'- aGCAaCUGCu-----GCCCGCgCGUA-GGCCG- -5'
17019 5' -58.1 NC_004333.2 + 11977 0.66 0.56728
Target:  5'- gCGUcGACGAuCGcGGC-CGUAUCgCGGUg -3'
miRNA:   3'- aGCAaCUGCU-GC-CCGcGCGUAG-GCCG- -5'
17019 5' -58.1 NC_004333.2 + 12276 0.66 0.525288
Target:  5'- cCGaugUGGCGuauaACGGcGUGCGCGUcgcaacgggCCGGCu -3'
miRNA:   3'- aGCa--ACUGC----UGCC-CGCGCGUA---------GGCCG- -5'
17019 5' -58.1 NC_004333.2 + 12280 0.68 0.435823
Target:  5'- aCGUacACGGCaccggcGGCGCGCAUUgCGGCg -3'
miRNA:   3'- aGCAacUGCUGc-----CCGCGCGUAG-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.