miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17019 5' -58.1 NC_004333.2 + 36122 0.77 0.108
Target:  5'- -gGUUGGCGACGGcCuGCGCGaCCGGCg -3'
miRNA:   3'- agCAACUGCUGCCcG-CGCGUaGGCCG- -5'
17019 5' -58.1 NC_004333.2 + 18539 0.67 0.474571
Target:  5'- ----cGGCGGCaacccGGGUGCgGCAgCCGGCg -3'
miRNA:   3'- agcaaCUGCUG-----CCCGCG-CGUaGGCCG- -5'
17019 5' -58.1 NC_004333.2 + 13524 0.67 0.484527
Target:  5'- cCGUccGACGugcuCGcGGCGuUGCcgCCGGCg -3'
miRNA:   3'- aGCAa-CUGCu---GC-CCGC-GCGuaGGCCG- -5'
17019 5' -58.1 NC_004333.2 + 41466 0.66 0.577922
Target:  5'- gUCGUgauccaUGGCGAgcucgagaaguCGGaGCGCGUGUuaGGCg -3'
miRNA:   3'- -AGCA------ACUGCU-----------GCC-CGCGCGUAggCCG- -5'
17019 5' -58.1 NC_004333.2 + 24110 0.73 0.206138
Target:  5'- gCGUUGAuCGACGGacagucgcaGCGCGCAauguUCgCGGCc -3'
miRNA:   3'- aGCAACU-GCUGCC---------CGCGCGU----AG-GCCG- -5'
17019 5' -58.1 NC_004333.2 + 48081 0.73 0.213772
Target:  5'- cUCGgugccGACGAggcgcaggcggcaacCGGGCGCGCGcaccgcgCCGGCa -3'
miRNA:   3'- -AGCaa---CUGCU---------------GCCCGCGCGUa------GGCCG- -5'
17019 5' -58.1 NC_004333.2 + 14160 0.7 0.355796
Target:  5'- uUCGUUGACGACcGGCcCGaugCCGGg -3'
miRNA:   3'- -AGCAACUGCUGcCCGcGCguaGGCCg -5'
17019 5' -58.1 NC_004333.2 + 43431 0.7 0.355796
Target:  5'- cUCGggucgGGCuGACGGacGCGCGCAUCgCGcGCu -3'
miRNA:   3'- -AGCaa---CUG-CUGCC--CGCGCGUAG-GC-CG- -5'
17019 5' -58.1 NC_004333.2 + 19253 0.69 0.390065
Target:  5'- aCG-UGACGAacauGCaCGCAUCCGGCg -3'
miRNA:   3'- aGCaACUGCUgcc-CGcGCGUAGGCCG- -5'
17019 5' -58.1 NC_004333.2 + 21511 0.67 0.464719
Target:  5'- gCGUgauuucacUGuCGACGGGCGCGUcgaacgcguaucGUCCGa- -3'
miRNA:   3'- aGCA--------ACuGCUGCCCGCGCG------------UAGGCcg -5'
17019 5' -58.1 NC_004333.2 + 20335 0.68 0.426423
Target:  5'- cCGgccgUGcCGACGGGUacCGCGaCCGGCu -3'
miRNA:   3'- aGCa---ACuGCUGCCCGc-GCGUaGGCCG- -5'
17019 5' -58.1 NC_004333.2 + 26589 0.69 0.37956
Target:  5'- gUCGUUGaACGugGucGGCGCGUucacgacaaagCUGGCg -3'
miRNA:   3'- -AGCAAC-UGCugC--CCGCGCGua---------GGCCG- -5'
17019 5' -58.1 NC_004333.2 + 20723 0.76 0.134519
Target:  5'- gCGgUGAUGACGGcGCGCGCGcugCCGGa -3'
miRNA:   3'- aGCaACUGCUGCC-CGCGCGUa--GGCCg -5'
17019 5' -58.1 NC_004333.2 + 12280 0.68 0.435823
Target:  5'- aCGUacACGGCaccggcGGCGCGCAUUgCGGCg -3'
miRNA:   3'- aGCAacUGCUGc-----CCGCGCGUAG-GCCG- -5'
17019 5' -58.1 NC_004333.2 + 13839 0.75 0.158214
Target:  5'- -gGUUcGACGACGGGCGCcGCGUCgaGcGCa -3'
miRNA:   3'- agCAA-CUGCUGCCCGCG-CGUAGg-C-CG- -5'
17019 5' -58.1 NC_004333.2 + 41688 0.69 0.372663
Target:  5'- cUCGUgcucGACG-CGGGCG-GCAacuUCgGGCg -3'
miRNA:   3'- -AGCAa---CUGCuGCCCGCgCGU---AGgCCG- -5'
17019 5' -58.1 NC_004333.2 + 20842 0.67 0.464719
Target:  5'- ----cGACgGGCGGcCGCGCAUCCuGCu -3'
miRNA:   3'- agcaaCUG-CUGCCcGCGCGUAGGcCG- -5'
17019 5' -58.1 NC_004333.2 + 29881 0.67 0.483527
Target:  5'- gUCGUcGGCGAagcgcugcgcgauCGGGcCGCGCG--CGGCa -3'
miRNA:   3'- -AGCAaCUGCU-------------GCCC-GCGCGUagGCCG- -5'
17019 5' -58.1 NC_004333.2 + 47212 0.74 0.176044
Target:  5'- gUCGcc-GCGACGGGCGCGCuacuUUCGaGCg -3'
miRNA:   3'- -AGCaacUGCUGCCCGCGCGu---AGGC-CG- -5'
17019 5' -58.1 NC_004333.2 + 2370 0.7 0.331518
Target:  5'- -aGUUGAuCGACGcGGCGUagcccaugacgGCG-CCGGCg -3'
miRNA:   3'- agCAACU-GCUGC-CCGCG-----------CGUaGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.