miRNA display CGI


Results 1 - 20 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17020 3' -54.9 NC_004333.2 + 21478 0.66 0.714383
Target:  5'- cCGGCCGAUuGCCUaugcgacuCGCGAAGuGUGg -3'
miRNA:   3'- -GCCGGCUGuUGGGc-------GCGUUUCuCAUg -5'
17020 3' -54.9 NC_004333.2 + 3218 0.66 0.703493
Target:  5'- uCGGCCGcCGACgUGCGCGcgcAGGAuaGCu -3'
miRNA:   3'- -GCCGGCuGUUGgGCGCGU---UUCUcaUG- -5'
17020 3' -54.9 NC_004333.2 + 30101 0.66 0.692531
Target:  5'- aCGcGUCGaugcGCGACCCGCGCAAcuGGaAGaUGCc -3'
miRNA:   3'- -GC-CGGC----UGUUGGGCGCGUU--UC-UC-AUG- -5'
17020 3' -54.9 NC_004333.2 + 20883 0.66 0.692531
Target:  5'- gGGCggCGACgAGCCCGgCGCAgcGcGUGCu -3'
miRNA:   3'- gCCG--GCUG-UUGGGC-GCGUuuCuCAUG- -5'
17020 3' -54.9 NC_004333.2 + 27859 0.66 0.681509
Target:  5'- aCGGCCGGCAagccuggcaACCaCGuCGCGgcGAGg-- -3'
miRNA:   3'- -GCCGGCUGU---------UGG-GC-GCGUuuCUCaug -5'
17020 3' -54.9 NC_004333.2 + 18807 0.66 0.681509
Target:  5'- gCGGgCGACGAgCCGCuuGAAGugcgcGUGCg -3'
miRNA:   3'- -GCCgGCUGUUgGGCGcgUUUCu----CAUG- -5'
17020 3' -54.9 NC_004333.2 + 16854 0.66 0.681509
Target:  5'- uGGCCGGCAuugcggGCgCCGUGCucGGcgucggcgcaGGUGCg -3'
miRNA:   3'- gCCGGCUGU------UG-GGCGCGuuUC----------UCAUG- -5'
17020 3' -54.9 NC_004333.2 + 7883 0.66 0.670439
Target:  5'- gGGCguacauCGACAAaCCGCGCAugcGGUACg -3'
miRNA:   3'- gCCG------GCUGUUgGGCGCGUuucUCAUG- -5'
17020 3' -54.9 NC_004333.2 + 40660 0.66 0.669329
Target:  5'- gCGGCCGACGaacuguucggcgcACUCGCgaccGCAAAGA--ACa -3'
miRNA:   3'- -GCCGGCUGU-------------UGGGCG----CGUUUCUcaUG- -5'
17020 3' -54.9 NC_004333.2 + 39637 0.67 0.658219
Target:  5'- gCGGCCGACugcuGCCgGaCGCGAAcuucacggucgccGAGgcgGCg -3'
miRNA:   3'- -GCCGGCUGu---UGGgC-GCGUUU-------------CUCa--UG- -5'
17020 3' -54.9 NC_004333.2 + 36317 0.67 0.652654
Target:  5'- uCGGCCGACcggcagacggaagcgAuguACCgGCGCAAgcuGGAGcGCg -3'
miRNA:   3'- -GCCGGCUG---------------U---UGGgCGCGUU---UCUCaUG- -5'
17020 3' -54.9 NC_004333.2 + 13893 0.67 0.648198
Target:  5'- uCGGCCGGCAcgGgCUGCGCGgcGGcUGCc -3'
miRNA:   3'- -GCCGGCUGU--UgGGCGCGUuuCUcAUG- -5'
17020 3' -54.9 NC_004333.2 + 2176 0.67 0.648198
Target:  5'- aGGCCGugcCAGCCCucgGCGCc--GAGUGg -3'
miRNA:   3'- gCCGGCu--GUUGGG---CGCGuuuCUCAUg -5'
17020 3' -54.9 NC_004333.2 + 14100 0.67 0.64151
Target:  5'- aGGauuCGACAAUCUGCGCGgcugcggcgaacacgGGGAGUGg -3'
miRNA:   3'- gCCg--GCUGUUGGGCGCGU---------------UUCUCAUg -5'
17020 3' -54.9 NC_004333.2 + 38986 0.67 0.63705
Target:  5'- cCGGCCGAuCGACCCGaacugGCAugucGAG-GCg -3'
miRNA:   3'- -GCCGGCU-GUUGGGCg----CGUuu--CUCaUG- -5'
17020 3' -54.9 NC_004333.2 + 44525 0.67 0.63705
Target:  5'- cCGGCCGAUcACCCcgagcacuucgcGCGCAcguacaAGUACg -3'
miRNA:   3'- -GCCGGCUGuUGGG------------CGCGUuuc---UCAUG- -5'
17020 3' -54.9 NC_004333.2 + 19943 0.67 0.625897
Target:  5'- cCGGgCGGCGAgCCGCcGC---GAGUGCu -3'
miRNA:   3'- -GCCgGCUGUUgGGCG-CGuuuCUCAUG- -5'
17020 3' -54.9 NC_004333.2 + 5189 0.67 0.622552
Target:  5'- uCGGUCGAgAGCgCCGCccgcucguccgccgGCGAGG-GUGCg -3'
miRNA:   3'- -GCCGGCUgUUG-GGCG--------------CGUUUCuCAUG- -5'
17020 3' -54.9 NC_004333.2 + 17242 0.67 0.61475
Target:  5'- -aGCCGGCcuGCCCGCGCAugcAGGAcGcGCu -3'
miRNA:   3'- gcCGGCUGu-UGGGCGCGU---UUCU-CaUG- -5'
17020 3' -54.9 NC_004333.2 + 28207 0.67 0.603618
Target:  5'- aGGCCGACAGCgCGCagucggGCAAAGcacucgACg -3'
miRNA:   3'- gCCGGCUGUUGgGCG------CGUUUCuca---UG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.