miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17020 5' -53 NC_004333.2 + 38219 1.13 0.000969
Target:  5'- uCGGUACACAACGUGCGGUUCGACGGCa -3'
miRNA:   3'- -GCCAUGUGUUGCACGCCAAGCUGCCG- -5'
17020 5' -53 NC_004333.2 + 22181 0.83 0.114681
Target:  5'- gCGGcgGC-CGGCG-GCGGUUCGGCGGCu -3'
miRNA:   3'- -GCCa-UGuGUUGCaCGCCAAGCUGCCG- -5'
17020 5' -53 NC_004333.2 + 25391 0.8 0.17923
Target:  5'- uGGUACGCAACGUGCGGcgcaUCGAacGCa -3'
miRNA:   3'- gCCAUGUGUUGCACGCCa---AGCUgcCG- -5'
17020 5' -53 NC_004333.2 + 39031 0.79 0.194465
Target:  5'- gCGGUcgagcaggcaaaGCGCGACGUGCGuuacGUgcUCGGCGGCg -3'
miRNA:   3'- -GCCA------------UGUGUUGCACGC----CA--AGCUGCCG- -5'
17020 5' -53 NC_004333.2 + 9305 0.74 0.386681
Target:  5'- gGGUGCGCgGACGgGCGGcgUUCGuAUGGCg -3'
miRNA:   3'- gCCAUGUG-UUGCaCGCC--AAGC-UGCCG- -5'
17020 5' -53 NC_004333.2 + 34065 0.74 0.405074
Target:  5'- aCGGgcCACGACGauaGCG--UCGACGGCa -3'
miRNA:   3'- -GCCauGUGUUGCa--CGCcaAGCUGCCG- -5'
17020 5' -53 NC_004333.2 + 38388 0.72 0.473557
Target:  5'- gGGUGCGcCGGCGUGacgccggccaCGGUcaaGACGGCg -3'
miRNA:   3'- gCCAUGU-GUUGCAC----------GCCAag-CUGCCG- -5'
17020 5' -53 NC_004333.2 + 27655 0.72 0.483816
Target:  5'- aGGccGC-CAGCGaGCGGcgCGGCGGCg -3'
miRNA:   3'- gCCa-UGuGUUGCaCGCCaaGCUGCCG- -5'
17020 5' -53 NC_004333.2 + 7090 0.72 0.512025
Target:  5'- uCGGUcGCAguCAugccaacaaaccgcACGUGCGGaUUGGCGGCg -3'
miRNA:   3'- -GCCA-UGU--GU--------------UGCACGCCaAGCUGCCG- -5'
17020 5' -53 NC_004333.2 + 33156 0.72 0.515202
Target:  5'- aGGUGgcgaguuuCGCGGCGU-CGGcgUCGGCGGCc -3'
miRNA:   3'- gCCAU--------GUGUUGCAcGCCa-AGCUGCCG- -5'
17020 5' -53 NC_004333.2 + 23315 0.71 0.525849
Target:  5'- cCGcaAUACccCGUGCGGUUCGuGCGGCc -3'
miRNA:   3'- -GCcaUGUGuuGCACGCCAAGC-UGCCG- -5'
17020 5' -53 NC_004333.2 + 19350 0.71 0.525849
Target:  5'- ---gGCACGAUGUGUGGUUcCGAuCGGUc -3'
miRNA:   3'- gccaUGUGUUGCACGCCAA-GCU-GCCG- -5'
17020 5' -53 NC_004333.2 + 37360 0.71 0.558254
Target:  5'- uGGcUACGCGACGUGCaccgcgUCGcGCGGCc -3'
miRNA:   3'- gCC-AUGUGUUGCACGcca---AGC-UGCCG- -5'
17020 5' -53 NC_004333.2 + 25008 0.71 0.569186
Target:  5'- aCGGcGCACcgaccGACGUGaCGGg-CGAUGGCa -3'
miRNA:   3'- -GCCaUGUG-----UUGCAC-GCCaaGCUGCCG- -5'
17020 5' -53 NC_004333.2 + 432 0.7 0.58017
Target:  5'- aGGcUGCGCGGCaGUGCGGaaCGcaaucuucACGGCg -3'
miRNA:   3'- gCC-AUGUGUUG-CACGCCaaGC--------UGCCG- -5'
17020 5' -53 NC_004333.2 + 10962 0.7 0.591198
Target:  5'- gCGGgcCACAGCGUcgcGCGGaacUCGGCaccGGCg -3'
miRNA:   3'- -GCCauGUGUUGCA---CGCCa--AGCUG---CCG- -5'
17020 5' -53 NC_004333.2 + 32232 0.7 0.610022
Target:  5'- -aGUGCGCAACGUgacuugccccgauuGUGGcggCGAUGGCa -3'
miRNA:   3'- gcCAUGUGUUGCA--------------CGCCaa-GCUGCCG- -5'
17020 5' -53 NC_004333.2 + 30686 0.7 0.624457
Target:  5'- uCGGUGCggucgagugcgaGCAGCGUGa-GcgCGGCGGCc -3'
miRNA:   3'- -GCCAUG------------UGUUGCACgcCaaGCUGCCG- -5'
17020 5' -53 NC_004333.2 + 37990 0.7 0.624457
Target:  5'- gCGcGUGCGCGAC-UGCaucuugUCGACGGCu -3'
miRNA:   3'- -GC-CAUGUGUUGcACGcca---AGCUGCCG- -5'
17020 5' -53 NC_004333.2 + 5714 0.7 0.63557
Target:  5'- uCGGUGguCAugGUGUGGUccUUaGCGGUa -3'
miRNA:   3'- -GCCAUguGUugCACGCCA--AGcUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.