miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17020 5' -53 NC_004333.2 + 22181 0.83 0.114681
Target:  5'- gCGGcgGC-CGGCG-GCGGUUCGGCGGCu -3'
miRNA:   3'- -GCCa-UGuGUUGCaCGCCAAGCUGCCG- -5'
17020 5' -53 NC_004333.2 + 44379 0.67 0.765542
Target:  5'- aGGUGCGCugcuCG-GCGGcgCGugcGCGGUa -3'
miRNA:   3'- gCCAUGUGuu--GCaCGCCaaGC---UGCCG- -5'
17020 5' -53 NC_004333.2 + 25118 0.66 0.805396
Target:  5'- aCGGcgaGCACGGCG-GCGcgcacGUUCG-CGGCc -3'
miRNA:   3'- -GCCa--UGUGUUGCaCGC-----CAAGCuGCCG- -5'
17020 5' -53 NC_004333.2 + 37302 0.66 0.850979
Target:  5'- aGGcgACGCGuuccagucggucGCG-GCGGUgcUCGACGcGCu -3'
miRNA:   3'- gCCa-UGUGU------------UGCaCGCCA--AGCUGC-CG- -5'
17020 5' -53 NC_004333.2 + 6678 0.7 0.63557
Target:  5'- aGGcGCGCAuccgccgcuucACGUGCGGggCGcauUGGCg -3'
miRNA:   3'- gCCaUGUGU-----------UGCACGCCaaGCu--GCCG- -5'
17020 5' -53 NC_004333.2 + 45422 0.69 0.64668
Target:  5'- uCGGUuu-CGGCG-GCGG--CGACGGCg -3'
miRNA:   3'- -GCCAuguGUUGCaCGCCaaGCUGCCG- -5'
17020 5' -53 NC_004333.2 + 37418 0.69 0.668848
Target:  5'- gCGGUuuGCGCGGCGUGCacguGUaCuGCGGCg -3'
miRNA:   3'- -GCCA--UGUGUUGCACGc---CAaGcUGCCG- -5'
17020 5' -53 NC_004333.2 + 1858 0.69 0.690875
Target:  5'- cCGGUGu----CGUGCGGUUCuGACGcGCc -3'
miRNA:   3'- -GCCAUguguuGCACGCCAAG-CUGC-CG- -5'
17020 5' -53 NC_004333.2 + 41076 0.68 0.734145
Target:  5'- ----cCGC-ACGUGCGGUUUGuuGGCa -3'
miRNA:   3'- gccauGUGuUGCACGCCAAGCugCCG- -5'
17020 5' -53 NC_004333.2 + 27163 0.67 0.765542
Target:  5'- uCGGcGCGCGaucagccauGCGUGCccccgaGGUgUGGCGGCa -3'
miRNA:   3'- -GCCaUGUGU---------UGCACG------CCAaGCUGCCG- -5'
17020 5' -53 NC_004333.2 + 20706 0.68 0.734145
Target:  5'- aCGGauCGCAGaCGaaUGCGGUgaUGACGGCg -3'
miRNA:   3'- -GCCauGUGUU-GC--ACGCCAa-GCUGCCG- -5'
17020 5' -53 NC_004333.2 + 48082 0.68 0.712672
Target:  5'- uCGGUGC-CGACGagGCGca--GGCGGCa -3'
miRNA:   3'- -GCCAUGuGUUGCa-CGCcaagCUGCCG- -5'
17020 5' -53 NC_004333.2 + 38388 0.72 0.473557
Target:  5'- gGGUGCGcCGGCGUGacgccggccaCGGUcaaGACGGCg -3'
miRNA:   3'- gCCAUGU-GUUGCAC----------GCCAag-CUGCCG- -5'
17020 5' -53 NC_004333.2 + 10682 0.68 0.734145
Target:  5'- cCGGUGCACGcuAUGcacuCGGUUCGAC-GCu -3'
miRNA:   3'- -GCCAUGUGU--UGCac--GCCAAGCUGcCG- -5'
17020 5' -53 NC_004333.2 + 37360 0.71 0.558254
Target:  5'- uGGcUACGCGACGUGCaccgcgUCGcGCGGCc -3'
miRNA:   3'- gCC-AUGUGUUGCACGcca---AGC-UGCCG- -5'
17020 5' -53 NC_004333.2 + 18551 0.68 0.712672
Target:  5'- gGGUGCgGCAGC---CGGcgCGGCGGCg -3'
miRNA:   3'- gCCAUG-UGUUGcacGCCaaGCUGCCG- -5'
17020 5' -53 NC_004333.2 + 12281 0.67 0.765542
Target:  5'- -cGUACACGGCaccgGCGGcgCGcauuGCGGCg -3'
miRNA:   3'- gcCAUGUGUUGca--CGCCaaGC----UGCCG- -5'
17020 5' -53 NC_004333.2 + 15497 0.67 0.775744
Target:  5'- aGGgcUGCucGCG-GCGGUcacCGGCGGCg -3'
miRNA:   3'- gCCauGUGu-UGCaCGCCAa--GCUGCCG- -5'
17020 5' -53 NC_004333.2 + 432 0.7 0.58017
Target:  5'- aGGcUGCGCGGCaGUGCGGaaCGcaaucuucACGGCg -3'
miRNA:   3'- gCC-AUGUGUUG-CACGCCaaGC--------UGCCG- -5'
17020 5' -53 NC_004333.2 + 13979 0.69 0.657776
Target:  5'- cCGGUGCGCGcgagcuGCGcgcgcuucuuUGCGuUUCGACGGg -3'
miRNA:   3'- -GCCAUGUGU------UGC----------ACGCcAAGCUGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.