miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17020 5' -53 NC_004333.2 + 75 0.66 0.841413
Target:  5'- gCGGUGCGC-GCGccCGGUugccgccugcgccUCGuCGGCa -3'
miRNA:   3'- -GCCAUGUGuUGCacGCCA-------------AGCuGCCG- -5'
17020 5' -53 NC_004333.2 + 432 0.7 0.58017
Target:  5'- aGGcUGCGCGGCaGUGCGGaaCGcaaucuucACGGCg -3'
miRNA:   3'- gCC-AUGUGUUG-CACGCCaaGC--------UGCCG- -5'
17020 5' -53 NC_004333.2 + 460 0.68 0.723455
Target:  5'- aCGGcGCGCGACGUGC----CGGCGaGCg -3'
miRNA:   3'- -GCCaUGUGUUGCACGccaaGCUGC-CG- -5'
17020 5' -53 NC_004333.2 + 1858 0.69 0.690875
Target:  5'- cCGGUGu----CGUGCGGUUCuGACGcGCc -3'
miRNA:   3'- -GCCAUguguuGCACGCCAAG-CUGC-CG- -5'
17020 5' -53 NC_004333.2 + 2421 0.66 0.842294
Target:  5'- -cGUACagcgGCAGCGUGCcuuGGUaCGgcGCGGCg -3'
miRNA:   3'- gcCAUG----UGUUGCACG---CCAaGC--UGCCG- -5'
17020 5' -53 NC_004333.2 + 3281 0.66 0.834284
Target:  5'- uGGUAgGCAuacgcccuuucuccuUGUGCGcg-CGGCGGCg -3'
miRNA:   3'- gCCAUgUGUu--------------GCACGCcaaGCUGCCG- -5'
17020 5' -53 NC_004333.2 + 3902 0.66 0.824256
Target:  5'- uGGUGuCGuggUAGCGccagGCGGcagCGGCGGCa -3'
miRNA:   3'- gCCAU-GU---GUUGCa---CGCCaa-GCUGCCG- -5'
17020 5' -53 NC_004333.2 + 4266 0.66 0.833383
Target:  5'- uCGGUGCGCuACGUG-GcGUUUGGuCGcGCa -3'
miRNA:   3'- -GCCAUGUGuUGCACgC-CAAGCU-GC-CG- -5'
17020 5' -53 NC_004333.2 + 5714 0.7 0.63557
Target:  5'- uCGGUGguCAugGUGUGGUccUUaGCGGUa -3'
miRNA:   3'- -GCCAUguGUugCACGCCA--AGcUGCCG- -5'
17020 5' -53 NC_004333.2 + 6678 0.7 0.63557
Target:  5'- aGGcGCGCAuccgccgcuucACGUGCGGggCGcauUGGCg -3'
miRNA:   3'- gCCaUGUGU-----------UGCACGCCaaGCu--GCCG- -5'
17020 5' -53 NC_004333.2 + 7090 0.72 0.512025
Target:  5'- uCGGUcGCAguCAugccaacaaaccgcACGUGCGGaUUGGCGGCg -3'
miRNA:   3'- -GCCA-UGU--GU--------------UGCACGCCaAGCUGCCG- -5'
17020 5' -53 NC_004333.2 + 7507 0.66 0.83248
Target:  5'- gCGGU-CGCGA-GUGCGccgaacaGUUCGuCGGCc -3'
miRNA:   3'- -GCCAuGUGUUgCACGC-------CAAGCuGCCG- -5'
17020 5' -53 NC_004333.2 + 8994 0.68 0.734145
Target:  5'- gCGGcgaccgACGCGGCGUucGCGGcuugccaGGCGGCg -3'
miRNA:   3'- -GCCa-----UGUGUUGCA--CGCCaag----CUGCCG- -5'
17020 5' -53 NC_004333.2 + 9305 0.74 0.386681
Target:  5'- gGGUGCGCgGACGgGCGGcgUUCGuAUGGCg -3'
miRNA:   3'- gCCAUGUG-UUGCaCGCC--AAGC-UGCCG- -5'
17020 5' -53 NC_004333.2 + 10006 0.66 0.824256
Target:  5'- gCGGccauUGCgaGCGGCGUGCcaaGaUCGGCGGCc -3'
miRNA:   3'- -GCC----AUG--UGUUGCACGc--CaAGCUGCCG- -5'
17020 5' -53 NC_004333.2 + 10682 0.68 0.734145
Target:  5'- cCGGUGCACGcuAUGcacuCGGUUCGAC-GCu -3'
miRNA:   3'- -GCCAUGUGU--UGCac--GCCAAGCUGcCG- -5'
17020 5' -53 NC_004333.2 + 10962 0.7 0.591198
Target:  5'- gCGGgcCACAGCGUcgcGCGGaacUCGGCaccGGCg -3'
miRNA:   3'- -GCCauGUGUUGCA---CGCCa--AGCUG---CCG- -5'
17020 5' -53 NC_004333.2 + 11335 0.69 0.684287
Target:  5'- gGGUugAUAGCGgccgGCGaUggccguagcgcgcacUCGACGGCa -3'
miRNA:   3'- gCCAugUGUUGCa---CGCcA---------------AGCUGCCG- -5'
17020 5' -53 NC_004333.2 + 12281 0.67 0.765542
Target:  5'- -cGUACACGGCaccgGCGGcgCGcauuGCGGCg -3'
miRNA:   3'- gcCAUGUGUUGca--CGCCaaGC----UGCCG- -5'
17020 5' -53 NC_004333.2 + 12718 0.66 0.824256
Target:  5'- aCGGUGC-CGACGuUGaCGGUcaCGACcGCa -3'
miRNA:   3'- -GCCAUGuGUUGC-AC-GCCAa-GCUGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.