miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17021 5' -58.7 NC_004333.2 + 38097 1.11 0.000305
Target:  5'- uGUACCGCGAUCCGACCGAGCUCGGGCa -3'
miRNA:   3'- -CAUGGCGCUAGGCUGGCUCGAGCCCG- -5'
17021 5' -58.7 NC_004333.2 + 19529 0.78 0.082802
Target:  5'- -gACCGCGAUCCGG-CGA-CUUGGGCg -3'
miRNA:   3'- caUGGCGCUAGGCUgGCUcGAGCCCG- -5'
17021 5' -58.7 NC_004333.2 + 45437 0.74 0.155814
Target:  5'- -gGCCGCGAUCuCGGCUGuGa-CGGGCa -3'
miRNA:   3'- caUGGCGCUAG-GCUGGCuCgaGCCCG- -5'
17021 5' -58.7 NC_004333.2 + 16185 0.74 0.173378
Target:  5'- aGUACgCGCuaucggacuAUCCGACCGAGCa-GGGCg -3'
miRNA:   3'- -CAUG-GCGc--------UAGGCUGGCUCGagCCCG- -5'
17021 5' -58.7 NC_004333.2 + 6868 0.73 0.197799
Target:  5'- -cAUCGCGcgCCGGgCGAGCUCGGc- -3'
miRNA:   3'- caUGGCGCuaGGCUgGCUCGAGCCcg -5'
17021 5' -58.7 NC_004333.2 + 28619 0.72 0.219448
Target:  5'- uGUGCCGCG--CCGACCGuGCgacCGGcGCc -3'
miRNA:   3'- -CAUGGCGCuaGGCUGGCuCGa--GCC-CG- -5'
17021 5' -58.7 NC_004333.2 + 28884 0.71 0.249319
Target:  5'- cGUGCCGCG---CGAUCGcGCUCGGcGCa -3'
miRNA:   3'- -CAUGGCGCuagGCUGGCuCGAGCC-CG- -5'
17021 5' -58.7 NC_004333.2 + 21178 0.71 0.249319
Target:  5'- cUGCCGCaggCCGGCCu-GCUCGGGg -3'
miRNA:   3'- cAUGGCGcuaGGCUGGcuCGAGCCCg -5'
17021 5' -58.7 NC_004333.2 + 39536 0.71 0.255682
Target:  5'- -aGCCGgGcgCCGcGCCGAGCUCGacgucgcgcaucGGCu -3'
miRNA:   3'- caUGGCgCuaGGC-UGGCUCGAGC------------CCG- -5'
17021 5' -58.7 NC_004333.2 + 6347 0.71 0.262178
Target:  5'- -gACCGC--UCgCGGCCGGGCgccgucgugccgUCGGGCa -3'
miRNA:   3'- caUGGCGcuAG-GCUGGCUCG------------AGCCCG- -5'
17021 5' -58.7 NC_004333.2 + 17002 0.71 0.266139
Target:  5'- aGUACgGCGcgCCGuCUGGGCggcgaugccaaggCGGGCg -3'
miRNA:   3'- -CAUGgCGCuaGGCuGGCUCGa------------GCCCG- -5'
17021 5' -58.7 NC_004333.2 + 2444 0.71 0.268138
Target:  5'- aUAUCGCGAUCgGcacguucgcGCCGGGCUCGagaugcaGGCg -3'
miRNA:   3'- cAUGGCGCUAGgC---------UGGCUCGAGC-------CCG- -5'
17021 5' -58.7 NC_004333.2 + 13881 0.7 0.311434
Target:  5'- -cGCCGCGcgaagUCGGCCG-GCaCGGGCu -3'
miRNA:   3'- caUGGCGCua---GGCUGGCuCGaGCCCG- -5'
17021 5' -58.7 NC_004333.2 + 24317 0.69 0.350734
Target:  5'- -aGCCGCGA-CCGACCGAgaauGCgcccccagaugUCGaGGCc -3'
miRNA:   3'- caUGGCGCUaGGCUGGCU----CG-----------AGC-CCG- -5'
17021 5' -58.7 NC_004333.2 + 10489 0.69 0.350734
Target:  5'- -aGCCGCcacgcgccGggCCGGCCGAcgaGCgggUCGGGCg -3'
miRNA:   3'- caUGGCG--------CuaGGCUGGCU---CG---AGCCCG- -5'
17021 5' -58.7 NC_004333.2 + 41292 0.69 0.359005
Target:  5'- -gGCgGCGAcuUCgacgaGGCCGAGCUCGcccGGCg -3'
miRNA:   3'- caUGgCGCU--AGg----CUGGCUCGAGC---CCG- -5'
17021 5' -58.7 NC_004333.2 + 33439 0.68 0.373376
Target:  5'- -aGCCGCGAgUCCGGCagcauuggcagcggCGcGC-CGGGCg -3'
miRNA:   3'- caUGGCGCU-AGGCUG--------------GCuCGaGCCCG- -5'
17021 5' -58.7 NC_004333.2 + 1760 0.68 0.375953
Target:  5'- -cGCCGCccuuccauucGAUCCaGCCccGCUCGGGUg -3'
miRNA:   3'- caUGGCG----------CUAGGcUGGcuCGAGCCCG- -5'
17021 5' -58.7 NC_004333.2 + 10293 0.68 0.384627
Target:  5'- -aAUCGCGAgcaggCCGAagcgcucaCCGGcCUCGGGCu -3'
miRNA:   3'- caUGGCGCUa----GGCU--------GGCUcGAGCCCG- -5'
17021 5' -58.7 NC_004333.2 + 24746 0.68 0.393432
Target:  5'- --gUCGacCGAUCCGGCCG-GCggCGGGUa -3'
miRNA:   3'- cauGGC--GCUAGGCUGGCuCGa-GCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.