miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17021 5' -58.7 NC_004333.2 + 1760 0.68 0.375953
Target:  5'- -cGCCGCccuuccauucGAUCCaGCCccGCUCGGGUg -3'
miRNA:   3'- caUGGCG----------CUAGGcUGGcuCGAGCCCG- -5'
17021 5' -58.7 NC_004333.2 + 2444 0.71 0.268138
Target:  5'- aUAUCGCGAUCgGcacguucgcGCCGGGCUCGagaugcaGGCg -3'
miRNA:   3'- cAUGGCGCUAGgC---------UGGCUCGAGC-------CCG- -5'
17021 5' -58.7 NC_004333.2 + 2572 0.67 0.45857
Target:  5'- uUGuuGCGA-CCGACCGGcaucacgaucucGCgacCGGGCu -3'
miRNA:   3'- cAUggCGCUaGGCUGGCU------------CGa--GCCCG- -5'
17021 5' -58.7 NC_004333.2 + 3017 0.66 0.52903
Target:  5'- -aAgCGCGGccaguaUCgGGCCGAcUUCGGGCg -3'
miRNA:   3'- caUgGCGCU------AGgCUGGCUcGAGCCCG- -5'
17021 5' -58.7 NC_004333.2 + 4526 0.66 0.53944
Target:  5'- uUGuuGCGAUCCugguggugcaGGCCGGacGCaCGGGCc -3'
miRNA:   3'- cAUggCGCUAGG----------CUGGCU--CGaGCCCG- -5'
17021 5' -58.7 NC_004333.2 + 5537 0.66 0.498274
Target:  5'- aUGCCGUGG-CCGGCgacGGCUUGGcGCg -3'
miRNA:   3'- cAUGGCGCUaGGCUGgc-UCGAGCC-CG- -5'
17021 5' -58.7 NC_004333.2 + 6347 0.71 0.262178
Target:  5'- -gACCGC--UCgCGGCCGGGCgccgucgugccgUCGGGCa -3'
miRNA:   3'- caUGGCGcuAG-GCUGGCUCG------------AGCCCG- -5'
17021 5' -58.7 NC_004333.2 + 6559 0.67 0.448909
Target:  5'- cUGCCGCcaGAgcaCGAgCGAGCgcgUGGGCc -3'
miRNA:   3'- cAUGGCG--CUag-GCUgGCUCGa--GCCCG- -5'
17021 5' -58.7 NC_004333.2 + 6810 0.68 0.420618
Target:  5'- aGUGCuUGCGGUCgGGCgCGuGCUCGaGCg -3'
miRNA:   3'- -CAUG-GCGCUAGgCUG-GCuCGAGCcCG- -5'
17021 5' -58.7 NC_004333.2 + 6868 0.73 0.197799
Target:  5'- -cAUCGCGcgCCGGgCGAGCUCGGc- -3'
miRNA:   3'- caUGGCGCuaGGCUgGCUCGAGCCcg -5'
17021 5' -58.7 NC_004333.2 + 8613 0.66 0.498274
Target:  5'- --uUCGCGAUgcacgaagCCGAugcgcgacgUCGAGCUCGGcGCg -3'
miRNA:   3'- cauGGCGCUA--------GGCU---------GGCUCGAGCC-CG- -5'
17021 5' -58.7 NC_004333.2 + 8905 0.66 0.538396
Target:  5'- -aACCuGCGAUCgCGcgcgcgugcgccuGCCGGccGCUCGGGg -3'
miRNA:   3'- caUGG-CGCUAG-GC-------------UGGCU--CGAGCCCg -5'
17021 5' -58.7 NC_004333.2 + 8993 0.66 0.498274
Target:  5'- -gGCgGCGA-CCGACgCGGcGUUCGcGGCu -3'
miRNA:   3'- caUGgCGCUaGGCUG-GCU-CGAGC-CCG- -5'
17021 5' -58.7 NC_004333.2 + 9538 0.68 0.402367
Target:  5'- cGUGCCGCccGggCCGAUcagaaCGGGCaccaCGGGCa -3'
miRNA:   3'- -CAUGGCG--CuaGGCUG-----GCUCGa---GCCCG- -5'
17021 5' -58.7 NC_004333.2 + 10158 0.66 0.518695
Target:  5'- gGUAUCGaacgGGUCgGcgcacuggaaGCCGAGCgacgCGGGCa -3'
miRNA:   3'- -CAUGGCg---CUAGgC----------UGGCUCGa---GCCCG- -5'
17021 5' -58.7 NC_004333.2 + 10293 0.68 0.384627
Target:  5'- -aAUCGCGAgcaggCCGAagcgcucaCCGGcCUCGGGCu -3'
miRNA:   3'- caUGGCGCUa----GGCU--------GGCUcGAGCCCG- -5'
17021 5' -58.7 NC_004333.2 + 10489 0.69 0.350734
Target:  5'- -aGCCGCcacgcgccGggCCGGCCGAcgaGCgggUCGGGCg -3'
miRNA:   3'- caUGGCG--------CuaGGCUGGCU---CG---AGCCCG- -5'
17021 5' -58.7 NC_004333.2 + 13881 0.7 0.311434
Target:  5'- -cGCCGCGcgaagUCGGCCG-GCaCGGGCu -3'
miRNA:   3'- caUGGCGCua---GGCUGGCuCGaGCCCG- -5'
17021 5' -58.7 NC_004333.2 + 16185 0.74 0.173378
Target:  5'- aGUACgCGCuaucggacuAUCCGACCGAGCa-GGGCg -3'
miRNA:   3'- -CAUG-GCGc--------UAGGCUGGCUCGagCCCG- -5'
17021 5' -58.7 NC_004333.2 + 17002 0.71 0.266139
Target:  5'- aGUACgGCGcgCCGuCUGGGCggcgaugccaaggCGGGCg -3'
miRNA:   3'- -CAUGgCGCuaGGCuGGCUCGa------------GCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.