miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17021 5' -58.7 NC_004333.2 + 21178 0.71 0.249319
Target:  5'- cUGCCGCaggCCGGCCu-GCUCGGGg -3'
miRNA:   3'- cAUGGCGcuaGGCUGGcuCGAGCCCg -5'
17021 5' -58.7 NC_004333.2 + 20160 0.66 0.498274
Target:  5'- -aGCCuacuCGG-CCG-CCG-GCUCGGGCg -3'
miRNA:   3'- caUGGc---GCUaGGCuGGCuCGAGCCCG- -5'
17021 5' -58.7 NC_004333.2 + 28763 0.66 0.518695
Target:  5'- -cGCCGCG--UCGACCGcgcGGgUCGcGGCg -3'
miRNA:   3'- caUGGCGCuaGGCUGGC---UCgAGC-CCG- -5'
17021 5' -58.7 NC_004333.2 + 20554 0.66 0.53944
Target:  5'- -gGCCGCGccgCUGAUCGucGGCgcgUCGGGUc -3'
miRNA:   3'- caUGGCGCua-GGCUGGC--UCG---AGCCCG- -5'
17021 5' -58.7 NC_004333.2 + 41292 0.69 0.359005
Target:  5'- -gGCgGCGAcuUCgacgaGGCCGAGCUCGcccGGCg -3'
miRNA:   3'- caUGgCGCU--AGg----CUGGCUCGAGC---CCG- -5'
17021 5' -58.7 NC_004333.2 + 33439 0.68 0.373376
Target:  5'- -aGCCGCGAgUCCGGCagcauuggcagcggCGcGC-CGGGCg -3'
miRNA:   3'- caUGGCGCU-AGGCUG--------------GCuCGaGCCCG- -5'
17021 5' -58.7 NC_004333.2 + 18016 0.68 0.402367
Target:  5'- -aGCCGaCGAagCCGGCCGAGUUCuacGCg -3'
miRNA:   3'- caUGGC-GCUa-GGCUGGCUCGAGcc-CG- -5'
17021 5' -58.7 NC_004333.2 + 41831 0.68 0.41143
Target:  5'- -gACgGCGc-CCGGCCgcGAGCggUCGGGCa -3'
miRNA:   3'- caUGgCGCuaGGCUGG--CUCG--AGCCCG- -5'
17021 5' -58.7 NC_004333.2 + 39774 0.67 0.448909
Target:  5'- cUGCagugGaCGAUCCGACCGAcgccGCUCGcGCu -3'
miRNA:   3'- cAUGg---C-GCUAGGCUGGCU----CGAGCcCG- -5'
17021 5' -58.7 NC_004333.2 + 5537 0.66 0.498274
Target:  5'- aUGCCGUGG-CCGGCgacGGCUUGGcGCg -3'
miRNA:   3'- cAUGGCGCUaGGCUGgc-UCGAGCC-CG- -5'
17021 5' -58.7 NC_004333.2 + 25423 0.67 0.468342
Target:  5'- cGUGCCgGCGG--CGGCCGucacGC-CGGGCg -3'
miRNA:   3'- -CAUGG-CGCUagGCUGGCu---CGaGCCCG- -5'
17021 5' -58.7 NC_004333.2 + 38633 0.68 0.420618
Target:  5'- gGUGCC-CGuUCUGAUCG-GCcCGGGCg -3'
miRNA:   3'- -CAUGGcGCuAGGCUGGCuCGaGCCCG- -5'
17021 5' -58.7 NC_004333.2 + 28884 0.71 0.249319
Target:  5'- cGUGCCGCG---CGAUCGcGCUCGGcGCa -3'
miRNA:   3'- -CAUGGCGCuagGCUGGCuCGAGCC-CG- -5'
17021 5' -58.7 NC_004333.2 + 8613 0.66 0.498274
Target:  5'- --uUCGCGAUgcacgaagCCGAugcgcgacgUCGAGCUCGGcGCg -3'
miRNA:   3'- cauGGCGCUA--------GGCU---------GGCUCGAGCC-CG- -5'
17021 5' -58.7 NC_004333.2 + 13881 0.7 0.311434
Target:  5'- -cGCCGCGcgaagUCGGCCG-GCaCGGGCu -3'
miRNA:   3'- caUGGCGCua---GGCUGGCuCGaGCCCG- -5'
17021 5' -58.7 NC_004333.2 + 20310 0.68 0.415091
Target:  5'- -cGCCGCGAcgugguugccaggcuUgCCGGCCGuGCcgaCGGGUa -3'
miRNA:   3'- caUGGCGCU---------------A-GGCUGGCuCGa--GCCCG- -5'
17021 5' -58.7 NC_004333.2 + 8993 0.66 0.498274
Target:  5'- -gGCgGCGA-CCGACgCGGcGUUCGcGGCu -3'
miRNA:   3'- caUGgCGCUaGGCUG-GCU-CGAGC-CCG- -5'
17021 5' -58.7 NC_004333.2 + 23944 0.66 0.518695
Target:  5'- cGUAgUGCGGUUCGugcccGCCGGGUgCGGGa -3'
miRNA:   3'- -CAUgGCGCUAGGC-----UGGCUCGaGCCCg -5'
17021 5' -58.7 NC_004333.2 + 24317 0.69 0.350734
Target:  5'- -aGCCGCGA-CCGACCGAgaauGCgcccccagaugUCGaGGCc -3'
miRNA:   3'- caUGGCGCUaGGCUGGCU----CG-----------AGC-CCG- -5'
17021 5' -58.7 NC_004333.2 + 45063 0.68 0.393432
Target:  5'- -cACCGCG---CGGCCGcGCcCGGGCa -3'
miRNA:   3'- caUGGCGCuagGCUGGCuCGaGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.