Results 1 - 20 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17023 | 3' | -58.8 | NC_004333.2 | + | 37433 | 1.08 | 0.000491 |
Target: 5'- gGCCGCGCGGUACGAUACGCCGCCAGUc -3' miRNA: 3'- -CGGCGCGCCAUGCUAUGCGGCGGUCA- -5' |
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17023 | 3' | -58.8 | NC_004333.2 | + | 3126 | 0.84 | 0.029463 |
Target: 5'- gGCCGCGCGGUguucaGCGuuugcGCGCCGCCAGc -3' miRNA: 3'- -CGGCGCGCCA-----UGCua---UGCGGCGGUCa -5' |
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17023 | 3' | -58.8 | NC_004333.2 | + | 19793 | 0.81 | 0.050894 |
Target: 5'- uGCCGCGCGuugaGUGCGAUGCGCUGCUg-- -3' miRNA: 3'- -CGGCGCGC----CAUGCUAUGCGGCGGuca -5' |
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17023 | 3' | -58.8 | NC_004333.2 | + | 14394 | 0.8 | 0.055447 |
Target: 5'- uGCCuGCGCGGUcgccaugaagGCGAguuucucGCGCCGCCAGUc -3' miRNA: 3'- -CGG-CGCGCCA----------UGCUa------UGCGGCGGUCA- -5' |
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17023 | 3' | -58.8 | NC_004333.2 | + | 25939 | 0.77 | 0.094833 |
Target: 5'- -gCGCGCGGcGCGAUGCcgGCgGCCAGUa -3' miRNA: 3'- cgGCGCGCCaUGCUAUG--CGgCGGUCA- -5' |
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17023 | 3' | -58.8 | NC_004333.2 | + | 19419 | 0.77 | 0.103097 |
Target: 5'- cCCGCGCGGUcgACGcgGCGCuCGCgCAGUu -3' miRNA: 3'- cGGCGCGCCA--UGCuaUGCG-GCG-GUCA- -5' |
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17023 | 3' | -58.8 | NC_004333.2 | + | 27681 | 0.74 | 0.15135 |
Target: 5'- gGCCGgcaGCGGuUGCGcgGCaGCCGCCGGg -3' miRNA: 3'- -CGGCg--CGCC-AUGCuaUG-CGGCGGUCa -5' |
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17023 | 3' | -58.8 | NC_004333.2 | + | 19174 | 0.74 | 0.155488 |
Target: 5'- aGCCGCGC---GCGAUGCGCaCGCCGa- -3' miRNA: 3'- -CGGCGCGccaUGCUAUGCG-GCGGUca -5' |
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17023 | 3' | -58.8 | NC_004333.2 | + | 47487 | 0.74 | 0.159729 |
Target: 5'- uGCCGCGCuGaACGAgGCGCCgGCCGGc -3' miRNA: 3'- -CGGCGCGcCaUGCUaUGCGG-CGGUCa -5' |
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17023 | 3' | -58.8 | NC_004333.2 | + | 24497 | 0.73 | 0.177751 |
Target: 5'- uCCGC-CGGccACGAUGCaGCCGCCGGa -3' miRNA: 3'- cGGCGcGCCa-UGCUAUG-CGGCGGUCa -5' |
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17023 | 3' | -58.8 | NC_004333.2 | + | 10871 | 0.73 | 0.195493 |
Target: 5'- cGCCGCGCGGgaagaacgccggcGCGAcagucacuUGCGCCGacgaCAGUg -3' miRNA: 3'- -CGGCGCGCCa------------UGCU--------AUGCGGCg---GUCA- -5' |
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17023 | 3' | -58.8 | NC_004333.2 | + | 31006 | 0.72 | 0.208165 |
Target: 5'- uGCuCGCGCGGUA-GGUGCGCUGCa--- -3' miRNA: 3'- -CG-GCGCGCCAUgCUAUGCGGCGguca -5' |
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17023 | 3' | -58.8 | NC_004333.2 | + | 21550 | 0.72 | 0.208165 |
Target: 5'- gGCgGUGCGacaACGAUcaACGCCGCCAGc -3' miRNA: 3'- -CGgCGCGCca-UGCUA--UGCGGCGGUCa -5' |
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17023 | 3' | -58.8 | NC_004333.2 | + | 27948 | 0.72 | 0.219262 |
Target: 5'- gGCCaGuCGCGGU-CGAU-CGCCGCCAc- -3' miRNA: 3'- -CGG-C-GCGCCAuGCUAuGCGGCGGUca -5' |
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17023 | 3' | -58.8 | NC_004333.2 | + | 31241 | 0.72 | 0.219262 |
Target: 5'- gGCCGCGCGGcGCa--GCGCCGUCucGGUg -3' miRNA: 3'- -CGGCGCGCCaUGcuaUGCGGCGG--UCA- -5' |
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17023 | 3' | -58.8 | NC_004333.2 | + | 19941 | 0.72 | 0.219262 |
Target: 5'- cGCCGgGCGG--CGAgcCGCCGCgAGUg -3' miRNA: 3'- -CGGCgCGCCauGCUauGCGGCGgUCA- -5' |
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17023 | 3' | -58.8 | NC_004333.2 | + | 13905 | 0.71 | 0.236244 |
Target: 5'- gGCUGCGCGGcggcugccgugGCGAUcguggccGCuGCCGCCAGc -3' miRNA: 3'- -CGGCGCGCCa----------UGCUA-------UG-CGGCGGUCa -5' |
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17023 | 3' | -58.8 | NC_004333.2 | + | 18859 | 0.71 | 0.236849 |
Target: 5'- uGCCGUGCGcaACGcauUGCCGCCGGg -3' miRNA: 3'- -CGGCGCGCcaUGCuauGCGGCGGUCa -5' |
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17023 | 3' | -58.8 | NC_004333.2 | + | 27217 | 0.71 | 0.262121 |
Target: 5'- cGCCGCGCGcGUuuGCGuccgGCcccguggcguaGCCGCCGGg -3' miRNA: 3'- -CGGCGCGC-CA--UGCua--UG-----------CGGCGGUCa -5' |
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17023 | 3' | -58.8 | NC_004333.2 | + | 6345 | 0.71 | 0.262121 |
Target: 5'- aCCGCGCGauuuUACGAUGCGCCGgUAu- -3' miRNA: 3'- cGGCGCGCc---AUGCUAUGCGGCgGUca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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