miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17023 3' -58.8 NC_004333.2 + 19793 0.81 0.050894
Target:  5'- uGCCGCGCGuugaGUGCGAUGCGCUGCUg-- -3'
miRNA:   3'- -CGGCGCGC----CAUGCUAUGCGGCGGuca -5'
17023 3' -58.8 NC_004333.2 + 4898 0.69 0.359307
Target:  5'- -gCGCGCGcUGCGAUaguGCGCCGUCGc- -3'
miRNA:   3'- cgGCGCGCcAUGCUA---UGCGGCGGUca -5'
17023 3' -58.8 NC_004333.2 + 29868 0.68 0.367748
Target:  5'- aGCgCGCGCGGUagucgucgGCGAaGCGCUGCgCGa- -3'
miRNA:   3'- -CG-GCGCGCCA--------UGCUaUGCGGCG-GUca -5'
17023 3' -58.8 NC_004333.2 + 38377 0.66 0.519674
Target:  5'- uGUCGCGUgucgGGUGCGccgGCGUgaCGCCGGc -3'
miRNA:   3'- -CGGCGCG----CCAUGCua-UGCG--GCGGUCa -5'
17023 3' -58.8 NC_004333.2 + 10871 0.73 0.195493
Target:  5'- cGCCGCGCGGgaagaacgccggcGCGAcagucacuUGCGCCGacgaCAGUg -3'
miRNA:   3'- -CGGCGCGCCa------------UGCU--------AUGCGGCg---GUCA- -5'
17023 3' -58.8 NC_004333.2 + 31006 0.72 0.208165
Target:  5'- uGCuCGCGCGGUA-GGUGCGCUGCa--- -3'
miRNA:   3'- -CG-GCGCGCCAUgCUAUGCGGCGguca -5'
17023 3' -58.8 NC_004333.2 + 31241 0.72 0.219262
Target:  5'- gGCCGCGCGGcGCa--GCGCCGUCucGGUg -3'
miRNA:   3'- -CGGCGCGCCaUGcuaUGCGGCGG--UCA- -5'
17023 3' -58.8 NC_004333.2 + 13905 0.71 0.236244
Target:  5'- gGCUGCGCGGcggcugccgugGCGAUcguggccGCuGCCGCCAGc -3'
miRNA:   3'- -CGGCGCGCCa----------UGCUA-------UG-CGGCGGUCa -5'
17023 3' -58.8 NC_004333.2 + 17772 0.7 0.282482
Target:  5'- cGCCGCGCGGUAau-UGCaaGCUGUUAGg -3'
miRNA:   3'- -CGGCGCGCCAUgcuAUG--CGGCGGUCa -5'
17023 3' -58.8 NC_004333.2 + 27214 0.69 0.334807
Target:  5'- uUCGCGCGGUACau--CGCCGUCGu- -3'
miRNA:   3'- cGGCGCGCCAUGcuauGCGGCGGUca -5'
17023 3' -58.8 NC_004333.2 + 21091 0.7 0.29674
Target:  5'- -aCGUGCGGcuucACGA-ACGCCGUCGGUc -3'
miRNA:   3'- cgGCGCGCCa---UGCUaUGCGGCGGUCA- -5'
17023 3' -58.8 NC_004333.2 + 6345 0.71 0.262121
Target:  5'- aCCGCGCGauuuUACGAUGCGCCGgUAu- -3'
miRNA:   3'- cGGCGCGCc---AUGCUAUGCGGCgGUca -5'
17023 3' -58.8 NC_004333.2 + 14394 0.8 0.055447
Target:  5'- uGCCuGCGCGGUcgccaugaagGCGAguuucucGCGCCGCCAGUc -3'
miRNA:   3'- -CGG-CGCGCCA----------UGCUa------UGCGGCGGUCA- -5'
17023 3' -58.8 NC_004333.2 + 36290 0.69 0.319164
Target:  5'- cCUGCGCcaUGCGAUacGCGCCGCCcgAGUa -3'
miRNA:   3'- cGGCGCGccAUGCUA--UGCGGCGG--UCA- -5'
17023 3' -58.8 NC_004333.2 + 25939 0.77 0.094833
Target:  5'- -gCGCGCGGcGCGAUGCcgGCgGCCAGUa -3'
miRNA:   3'- cgGCGCGCCaUGCUAUG--CGgCGGUCA- -5'
17023 3' -58.8 NC_004333.2 + 18859 0.71 0.236849
Target:  5'- uGCCGUGCGcaACGcauUGCCGCCGGg -3'
miRNA:   3'- -CGGCGCGCcaUGCuauGCGGCGGUCa -5'
17023 3' -58.8 NC_004333.2 + 249 0.69 0.319164
Target:  5'- cGCCGUGCcGUuCGAUguggucgucACGCCGCCGa- -3'
miRNA:   3'- -CGGCGCGcCAuGCUA---------UGCGGCGGUca -5'
17023 3' -58.8 NC_004333.2 + 11633 0.68 0.367748
Target:  5'- -gCGCGCGaacGUGuCGAaguaGCGCUGCCAGUa -3'
miRNA:   3'- cgGCGCGC---CAU-GCUa---UGCGGCGGUCA- -5'
17023 3' -58.8 NC_004333.2 + 47487 0.74 0.159729
Target:  5'- uGCCGCGCuGaACGAgGCGCCgGCCGGc -3'
miRNA:   3'- -CGGCGCGcCaUGCUaUGCGG-CGGUCa -5'
17023 3' -58.8 NC_004333.2 + 19941 0.72 0.219262
Target:  5'- cGCCGgGCGG--CGAgcCGCCGCgAGUg -3'
miRNA:   3'- -CGGCgCGCCauGCUauGCGGCGgUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.