miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17023 3' -58.8 NC_004333.2 + 68 0.71 0.267431
Target:  5'- uGCCgGCGCGGUGCGcgcgcccgguUGCCGCCu-- -3'
miRNA:   3'- -CGG-CGCGCCAUGCuau-------GCGGCGGuca -5'
17023 3' -58.8 NC_004333.2 + 249 0.69 0.319164
Target:  5'- cGCCGUGCcGUuCGAUguggucgucACGCCGCCGa- -3'
miRNA:   3'- -CGGCGCGcCAuGCUA---------UGCGGCGGUca -5'
17023 3' -58.8 NC_004333.2 + 622 0.66 0.489047
Target:  5'- cCCGacaGCGGgcCGG--UGCUGCCAGUg -3'
miRNA:   3'- cGGCg--CGCCauGCUauGCGGCGGUCA- -5'
17023 3' -58.8 NC_004333.2 + 2476 0.67 0.459293
Target:  5'- aGCCGCGuuGUucgagACGAUcgACGCUGCCu-- -3'
miRNA:   3'- -CGGCGCgcCA-----UGCUA--UGCGGCGGuca -5'
17023 3' -58.8 NC_004333.2 + 2633 0.67 0.449589
Target:  5'- aCCGCGCGGUucaucGCGCuUGCCGGc -3'
miRNA:   3'- cGGCGCGCCAugcuaUGCG-GCGGUCa -5'
17023 3' -58.8 NC_004333.2 + 3126 0.84 0.029463
Target:  5'- gGCCGCGCGGUguucaGCGuuugcGCGCCGCCAGc -3'
miRNA:   3'- -CGGCGCGCCA-----UGCua---UGCGGCGGUCa -5'
17023 3' -58.8 NC_004333.2 + 3576 0.7 0.275558
Target:  5'- gGCgGCaGCGGUACGGUguuuucccacACGCCGaCCAu- -3'
miRNA:   3'- -CGgCG-CGCCAUGCUA----------UGCGGC-GGUca -5'
17023 3' -58.8 NC_004333.2 + 4068 0.66 0.509377
Target:  5'- aGCCGcCGCGaaACGAUGCgaagucGCCGCCc-- -3'
miRNA:   3'- -CGGC-GCGCcaUGCUAUG------CGGCGGuca -5'
17023 3' -58.8 NC_004333.2 + 4804 0.66 0.499166
Target:  5'- cGUCGCGUG--ACGcucAUACGCCGCCcGg -3'
miRNA:   3'- -CGGCGCGCcaUGC---UAUGCGGCGGuCa -5'
17023 3' -58.8 NC_004333.2 + 4856 0.67 0.430529
Target:  5'- cGCgCGCGCcGUGcCGAUGcCGCUGCCGc- -3'
miRNA:   3'- -CG-GCGCGcCAU-GCUAU-GCGGCGGUca -5'
17023 3' -58.8 NC_004333.2 + 4898 0.69 0.359307
Target:  5'- -gCGCGCGcUGCGAUaguGCGCCGUCGc- -3'
miRNA:   3'- cgGCGCGCcAUGCUA---UGCGGCGGUca -5'
17023 3' -58.8 NC_004333.2 + 6345 0.71 0.262121
Target:  5'- aCCGCGCGauuuUACGAUGCGCCGgUAu- -3'
miRNA:   3'- cGGCGCGCc---AUGCUAUGCGGCgGUca -5'
17023 3' -58.8 NC_004333.2 + 6565 0.68 0.414705
Target:  5'- aGCgGCGCGcGUACGcgcgaaagcccgcauCGCCGCCAc- -3'
miRNA:   3'- -CGgCGCGC-CAUGCuau------------GCGGCGGUca -5'
17023 3' -58.8 NC_004333.2 + 7444 0.69 0.342836
Target:  5'- aUCGCGUucaGGaGCGAcuUGcCGCCGCCGGUg -3'
miRNA:   3'- cGGCGCG---CCaUGCU--AU-GCGGCGGUCA- -5'
17023 3' -58.8 NC_004333.2 + 7805 0.68 0.392097
Target:  5'- gGCCgaGCGCGG-ACGAguaguuuagcuCGCuCGCCAGa -3'
miRNA:   3'- -CGG--CGCGCCaUGCUau---------GCG-GCGGUCa -5'
17023 3' -58.8 NC_004333.2 + 8163 0.7 0.307049
Target:  5'- cGCCGCGCGaGUuccgugaucaguccuACGA-ACGC-GCCAGUc -3'
miRNA:   3'- -CGGCGCGC-CA---------------UGCUaUGCGgCGGUCA- -5'
17023 3' -58.8 NC_004333.2 + 8218 0.68 0.376324
Target:  5'- cGCUGCGCGGcAgGAUgACGCCgGCCc-- -3'
miRNA:   3'- -CGGCGCGCCaUgCUA-UGCGG-CGGuca -5'
17023 3' -58.8 NC_004333.2 + 8837 0.7 0.31155
Target:  5'- uGCC-UGCGGUGCGucguagaagcGCGCCGCCGc- -3'
miRNA:   3'- -CGGcGCGCCAUGCua--------UGCGGCGGUca -5'
17023 3' -58.8 NC_004333.2 + 8913 0.66 0.519674
Target:  5'- aUCGCGCGc-GCG-UGCGCCuGCCGGc -3'
miRNA:   3'- cGGCGCGCcaUGCuAUGCGG-CGGUCa -5'
17023 3' -58.8 NC_004333.2 + 8983 0.66 0.49815
Target:  5'- gGCCGUGCGcGgcgGCGAccgACGCggcguucgcggcuUGCCAGg -3'
miRNA:   3'- -CGGCGCGC-Ca--UGCUa--UGCG-------------GCGGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.