Results 1 - 20 of 68 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17025 | 3' | -56.5 | NC_004333.2 | + | 36659 | 1.1 | 0.000475 |
Target: 5'- cUCGACAUGACGCCUUCGCAGCGCCUCg -3' miRNA: 3'- -AGCUGUACUGCGGAAGCGUCGCGGAG- -5' |
|||||||
17025 | 3' | -56.5 | NC_004333.2 | + | 17283 | 0.84 | 0.037911 |
Target: 5'- uUCGACGUGaACGCCggccggCGCAGCGuCCUCg -3' miRNA: 3'- -AGCUGUAC-UGCGGaa----GCGUCGC-GGAG- -5' |
|||||||
17025 | 3' | -56.5 | NC_004333.2 | + | 41248 | 0.78 | 0.104994 |
Target: 5'- uUCGAC-UGGCGCCcgCGCA-CGCCUCa -3' miRNA: 3'- -AGCUGuACUGCGGaaGCGUcGCGGAG- -5' |
|||||||
17025 | 3' | -56.5 | NC_004333.2 | + | 42141 | 0.75 | 0.178487 |
Target: 5'- aCGACAUGACGCUcaCGCccgagggcaacAGCGuCCUCg -3' miRNA: 3'- aGCUGUACUGCGGaaGCG-----------UCGC-GGAG- -5' |
|||||||
17025 | 3' | -56.5 | NC_004333.2 | + | 9055 | 0.74 | 0.193623 |
Target: 5'- gCGACAcgucGACGCCgaucugCGUgAGCGCCUCg -3' miRNA: 3'- aGCUGUa---CUGCGGaa----GCG-UCGCGGAG- -5' |
|||||||
17025 | 3' | -56.5 | NC_004333.2 | + | 3943 | 0.74 | 0.214968 |
Target: 5'- cCGGCAgguUGGCGCCgUUCugcagguaggagaGCAGCGUCUCg -3' miRNA: 3'- aGCUGU---ACUGCGG-AAG-------------CGUCGCGGAG- -5' |
|||||||
17025 | 3' | -56.5 | NC_004333.2 | + | 29402 | 0.73 | 0.245895 |
Target: 5'- aCGGCGUaACGCCguucgccgUCGCGGCGCUg- -3' miRNA: 3'- aGCUGUAcUGCGGa-------AGCGUCGCGGag -5' |
|||||||
17025 | 3' | -56.5 | NC_004333.2 | + | 6744 | 0.72 | 0.265758 |
Target: 5'- uUCGAgcgcCAcGGCGCCccggUCGC-GCGCCUCg -3' miRNA: 3'- -AGCU----GUaCUGCGGa---AGCGuCGCGGAG- -5' |
|||||||
17025 | 3' | -56.5 | NC_004333.2 | + | 916 | 0.72 | 0.286901 |
Target: 5'- gUCGGCAUuGCGCCcUCGUAGCGUg-- -3' miRNA: 3'- -AGCUGUAcUGCGGaAGCGUCGCGgag -5' |
|||||||
17025 | 3' | -56.5 | NC_004333.2 | + | 41232 | 0.72 | 0.286901 |
Target: 5'- cCGGuCGUGuCGCCgUCGCuGCGCUUCc -3' miRNA: 3'- aGCU-GUACuGCGGaAGCGuCGCGGAG- -5' |
|||||||
17025 | 3' | -56.5 | NC_004333.2 | + | 10365 | 0.72 | 0.286901 |
Target: 5'- cUCGAuCGcGACGCgCUUCGCAucGCGCCg- -3' miRNA: 3'- -AGCU-GUaCUGCG-GAAGCGU--CGCGGag -5' |
|||||||
17025 | 3' | -56.5 | NC_004333.2 | + | 40027 | 0.71 | 0.301719 |
Target: 5'- cUCG-CGcGGCGCCacggCGCGGaCGCCUCg -3' miRNA: 3'- -AGCuGUaCUGCGGaa--GCGUC-GCGGAG- -5' |
|||||||
17025 | 3' | -56.5 | NC_004333.2 | + | 31544 | 0.71 | 0.309346 |
Target: 5'- gUCGACgAUGuuUGCgUUCGCGGCGUCUg -3' miRNA: 3'- -AGCUG-UACu-GCGgAAGCGUCGCGGAg -5' |
|||||||
17025 | 3' | -56.5 | NC_004333.2 | + | 1257 | 0.71 | 0.317119 |
Target: 5'- aCGGCAUGACGugcuCCUUgGC-GCGCCg- -3' miRNA: 3'- aGCUGUACUGC----GGAAgCGuCGCGGag -5' |
|||||||
17025 | 3' | -56.5 | NC_004333.2 | + | 3772 | 0.71 | 0.333105 |
Target: 5'- gUCGACGUGGCguucugaucgGCCUUCGCGaucuGCGCa-- -3' miRNA: 3'- -AGCUGUACUG----------CGGAAGCGU----CGCGgag -5' |
|||||||
17025 | 3' | -56.5 | NC_004333.2 | + | 22753 | 0.7 | 0.375608 |
Target: 5'- cCGGCGUGACgGCCgcCGCcggcacgcugcaGGCGCgCUCg -3' miRNA: 3'- aGCUGUACUG-CGGaaGCG------------UCGCG-GAG- -5' |
|||||||
17025 | 3' | -56.5 | NC_004333.2 | + | 9741 | 0.7 | 0.381844 |
Target: 5'- gCGACAUGAgCGCCggaugCGCgcccgucgucaacgAGCGCCa- -3' miRNA: 3'- aGCUGUACU-GCGGaa---GCG--------------UCGCGGag -5' |
|||||||
17025 | 3' | -56.5 | NC_004333.2 | + | 38445 | 0.7 | 0.384537 |
Target: 5'- cCGGCGcucaUGuCGCCgaCGCGGCGUUUCg -3' miRNA: 3'- aGCUGU----ACuGCGGaaGCGUCGCGGAG- -5' |
|||||||
17025 | 3' | -56.5 | NC_004333.2 | + | 588 | 0.69 | 0.393606 |
Target: 5'- aUCGGCaAUGGCGCCaUCaguaacguagGCAGUGCC-Cg -3' miRNA: 3'- -AGCUG-UACUGCGGaAG----------CGUCGCGGaG- -5' |
|||||||
17025 | 3' | -56.5 | NC_004333.2 | + | 2274 | 0.69 | 0.402812 |
Target: 5'- cUCGGCAa-GCaCCUcgaGCAGCGCCUCg -3' miRNA: 3'- -AGCUGUacUGcGGAag-CGUCGCGGAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home