miRNA display CGI


Results 1 - 20 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17025 3' -56.5 NC_004333.2 + 17283 0.84 0.037911
Target:  5'- uUCGACGUGaACGCCggccggCGCAGCGuCCUCg -3'
miRNA:   3'- -AGCUGUAC-UGCGGaa----GCGUCGC-GGAG- -5'
17025 3' -56.5 NC_004333.2 + 43541 0.68 0.469867
Target:  5'- cUCGACgAUGaccGCGCCUgaUCGCAuuaauggcgugucGCGCgCUCg -3'
miRNA:   3'- -AGCUG-UAC---UGCGGA--AGCGU-------------CGCG-GAG- -5'
17025 3' -56.5 NC_004333.2 + 19494 0.68 0.481082
Target:  5'- aUCGGCGcUGGCGCgCUg-GCGGCGCUc- -3'
miRNA:   3'- -AGCUGU-ACUGCG-GAagCGUCGCGGag -5'
17025 3' -56.5 NC_004333.2 + 45251 0.66 0.621097
Target:  5'- cCGGCAUcgaaGCGCg--CGUGGCGCCUUg -3'
miRNA:   3'- aGCUGUAc---UGCGgaaGCGUCGCGGAG- -5'
17025 3' -56.5 NC_004333.2 + 29402 0.73 0.245895
Target:  5'- aCGGCGUaACGCCguucgccgUCGCGGCGCUg- -3'
miRNA:   3'- aGCUGUAcUGCGGa-------AGCGUCGCGGag -5'
17025 3' -56.5 NC_004333.2 + 6744 0.72 0.265758
Target:  5'- uUCGAgcgcCAcGGCGCCccggUCGC-GCGCCUCg -3'
miRNA:   3'- -AGCU----GUaCUGCGGa---AGCGuCGCGGAG- -5'
17025 3' -56.5 NC_004333.2 + 41232 0.72 0.286901
Target:  5'- cCGGuCGUGuCGCCgUCGCuGCGCUUCc -3'
miRNA:   3'- aGCU-GUACuGCGGaAGCGuCGCGGAG- -5'
17025 3' -56.5 NC_004333.2 + 40027 0.71 0.301719
Target:  5'- cUCG-CGcGGCGCCacggCGCGGaCGCCUCg -3'
miRNA:   3'- -AGCuGUaCUGCGGaa--GCGUC-GCGGAG- -5'
17025 3' -56.5 NC_004333.2 + 3772 0.71 0.333105
Target:  5'- gUCGACGUGGCguucugaucgGCCUUCGCGaucuGCGCa-- -3'
miRNA:   3'- -AGCUGUACUG----------CGGAAGCGU----CGCGgag -5'
17025 3' -56.5 NC_004333.2 + 3384 0.68 0.450817
Target:  5'- gUCGACcgGcguCGCCgucgUCGCGGgaGCUUCg -3'
miRNA:   3'- -AGCUGuaCu--GCGGa---AGCGUCg-CGGAG- -5'
17025 3' -56.5 NC_004333.2 + 588 0.69 0.393606
Target:  5'- aUCGGCaAUGGCGCCaUCaguaacguagGCAGUGCC-Cg -3'
miRNA:   3'- -AGCUG-UACUGCGGaAG----------CGUCGCGGaG- -5'
17025 3' -56.5 NC_004333.2 + 1257 0.71 0.317119
Target:  5'- aCGGCAUGACGugcuCCUUgGC-GCGCCg- -3'
miRNA:   3'- aGCUGUACUGC----GGAAgCGuCGCGGag -5'
17025 3' -56.5 NC_004333.2 + 42141 0.75 0.178487
Target:  5'- aCGACAUGACGCUcaCGCccgagggcaacAGCGuCCUCg -3'
miRNA:   3'- aGCUGUACUGCGGaaGCG-----------UCGC-GGAG- -5'
17025 3' -56.5 NC_004333.2 + 25166 0.69 0.402812
Target:  5'- aUCGACAcgcuCGCCUgcCGCcGCGUCUCg -3'
miRNA:   3'- -AGCUGUacu-GCGGAa-GCGuCGCGGAG- -5'
17025 3' -56.5 NC_004333.2 + 9055 0.74 0.193623
Target:  5'- gCGACAcgucGACGCCgaucugCGUgAGCGCCUCg -3'
miRNA:   3'- aGCUGUa---CUGCGGaa----GCG-UCGCGGAG- -5'
17025 3' -56.5 NC_004333.2 + 31544 0.71 0.309346
Target:  5'- gUCGACgAUGuuUGCgUUCGCGGCGUCUg -3'
miRNA:   3'- -AGCUG-UACu-GCGgAAGCGUCGCGGAg -5'
17025 3' -56.5 NC_004333.2 + 31236 0.69 0.440963
Target:  5'- gCGACGgccGCGCgg-CGCAGCGCCg- -3'
miRNA:   3'- aGCUGUac-UGCGgaaGCGUCGCGGag -5'
17025 3' -56.5 NC_004333.2 + 24421 0.68 0.470881
Target:  5'- gUCGACccacuggucgaAUGAgGCCa--GCAGCGCCa- -3'
miRNA:   3'- -AGCUG-----------UACUgCGGaagCGUCGCGGag -5'
17025 3' -56.5 NC_004333.2 + 3943 0.74 0.214968
Target:  5'- cCGGCAgguUGGCGCCgUUCugcagguaggagaGCAGCGUCUCg -3'
miRNA:   3'- aGCUGU---ACUGCGG-AAG-------------CGUCGCGGAG- -5'
17025 3' -56.5 NC_004333.2 + 916 0.72 0.286901
Target:  5'- gUCGGCAUuGCGCCcUCGUAGCGUg-- -3'
miRNA:   3'- -AGCUGUAcUGCGGaAGCGUCGCGgag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.