miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17025 3' -56.5 NC_004333.2 + 588 0.69 0.393606
Target:  5'- aUCGGCaAUGGCGCCaUCaguaacguagGCAGUGCC-Cg -3'
miRNA:   3'- -AGCUG-UACUGCGGaAG----------CGUCGCGGaG- -5'
17025 3' -56.5 NC_004333.2 + 700 0.67 0.53357
Target:  5'- gCGAuCGUGcCGCCgccCGCgAGCGCCg- -3'
miRNA:   3'- aGCU-GUACuGCGGaa-GCG-UCGCGGag -5'
17025 3' -56.5 NC_004333.2 + 916 0.72 0.286901
Target:  5'- gUCGGCAUuGCGCCcUCGUAGCGUg-- -3'
miRNA:   3'- -AGCUGUAcUGCGGaAGCGUCGCGgag -5'
17025 3' -56.5 NC_004333.2 + 1257 0.71 0.317119
Target:  5'- aCGGCAUGACGugcuCCUUgGC-GCGCCg- -3'
miRNA:   3'- aGCUGUACUGC----GGAAgCGuCGCGGag -5'
17025 3' -56.5 NC_004333.2 + 2274 0.69 0.402812
Target:  5'- cUCGGCAa-GCaCCUcgaGCAGCGCCUCg -3'
miRNA:   3'- -AGCUGUacUGcGGAag-CGUCGCGGAG- -5'
17025 3' -56.5 NC_004333.2 + 3384 0.68 0.450817
Target:  5'- gUCGACcgGcguCGCCgucgUCGCGGgaGCUUCg -3'
miRNA:   3'- -AGCUGuaCu--GCGGa---AGCGUCg-CGGAG- -5'
17025 3' -56.5 NC_004333.2 + 3772 0.71 0.333105
Target:  5'- gUCGACGUGGCguucugaucgGCCUUCGCGaucuGCGCa-- -3'
miRNA:   3'- -AGCUGUACUG----------CGGAAGCGU----CGCGgag -5'
17025 3' -56.5 NC_004333.2 + 3943 0.74 0.214968
Target:  5'- cCGGCAgguUGGCGCCgUUCugcagguaggagaGCAGCGUCUCg -3'
miRNA:   3'- aGCUGU---ACUGCGG-AAG-------------CGUCGCGGAG- -5'
17025 3' -56.5 NC_004333.2 + 5056 0.66 0.576969
Target:  5'- gUUGGCc-GACGUCggCGCGGCGCUg- -3'
miRNA:   3'- -AGCUGuaCUGCGGaaGCGUCGCGGag -5'
17025 3' -56.5 NC_004333.2 + 5387 0.68 0.470881
Target:  5'- gCGGC-UGACGCCUUCaCAuaGCUUCc -3'
miRNA:   3'- aGCUGuACUGCGGAAGcGUcgCGGAG- -5'
17025 3' -56.5 NC_004333.2 + 6063 0.69 0.412153
Target:  5'- cCGGCAacUGGCGCaCcUCGCGacaCGCCUCg -3'
miRNA:   3'- aGCUGU--ACUGCG-GaAGCGUc--GCGGAG- -5'
17025 3' -56.5 NC_004333.2 + 6738 0.66 0.610027
Target:  5'- cCGACucgcccGCGUCga-GCAGCGCCUg -3'
miRNA:   3'- aGCUGuac---UGCGGaagCGUCGCGGAg -5'
17025 3' -56.5 NC_004333.2 + 6744 0.72 0.265758
Target:  5'- uUCGAgcgcCAcGGCGCCccggUCGC-GCGCCUCg -3'
miRNA:   3'- -AGCU----GUaCUGCGGa---AGCGuCGCGGAG- -5'
17025 3' -56.5 NC_004333.2 + 6911 0.66 0.621097
Target:  5'- uUCGuCuUGACGCCUUCGguGuCGaUCUg -3'
miRNA:   3'- -AGCuGuACUGCGGAAGCguC-GC-GGAg -5'
17025 3' -56.5 NC_004333.2 + 7394 0.67 0.53357
Target:  5'- gCGACAUGACGCgUgccUGCGGCcagGUCUg -3'
miRNA:   3'- aGCUGUACUGCGgAa--GCGUCG---CGGAg -5'
17025 3' -56.5 NC_004333.2 + 7405 0.67 0.544322
Target:  5'- gUCGcCGUGuccuUGCCUUcgacgCGCGGCGCC-Ca -3'
miRNA:   3'- -AGCuGUACu---GCGGAA-----GCGUCGCGGaG- -5'
17025 3' -56.5 NC_004333.2 + 9055 0.74 0.193623
Target:  5'- gCGACAcgucGACGCCgaucugCGUgAGCGCCUCg -3'
miRNA:   3'- aGCUGUa---CUGCGGaa----GCG-UCGCGGAG- -5'
17025 3' -56.5 NC_004333.2 + 9741 0.7 0.381844
Target:  5'- gCGACAUGAgCGCCggaugCGCgcccgucgucaacgAGCGCCa- -3'
miRNA:   3'- aGCUGUACU-GCGGaa---GCG--------------UCGCGGag -5'
17025 3' -56.5 NC_004333.2 + 9792 0.66 0.562758
Target:  5'- cCGGCGUcACGCCggCGCacccgacacgcgacAGCGCgUCg -3'
miRNA:   3'- aGCUGUAcUGCGGaaGCG--------------UCGCGgAG- -5'
17025 3' -56.5 NC_004333.2 + 10365 0.72 0.286901
Target:  5'- cUCGAuCGcGACGCgCUUCGCAucGCGCCg- -3'
miRNA:   3'- -AGCU-GUaCUGCG-GAAGCGU--CGCGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.