miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17026 5' -53.2 NC_004333.2 + 36509 1.1 0.001104
Target:  5'- uUCGACGAAAUGAAGCGCCUGCGCGACu -3'
miRNA:   3'- -AGCUGCUUUACUUCGCGGACGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 26514 0.77 0.230035
Target:  5'- gUCGAUGAAGUccGgcGCGCCgacagGUGCGGCg -3'
miRNA:   3'- -AGCUGCUUUA--CuuCGCGGa----CGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 47479 0.76 0.242681
Target:  5'- gCGGCGAcugccgcgcugAAcGAGGCGCCggccgGCGCGACc -3'
miRNA:   3'- aGCUGCU-----------UUaCUUCGCGGa----CGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 9237 0.76 0.249218
Target:  5'- gCGcCGAAcgGggGCGCCUcgccgcGUGCGGCa -3'
miRNA:   3'- aGCuGCUUuaCuuCGCGGA------CGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 42078 0.76 0.262729
Target:  5'- aCGACGAGGau-AGCGUcgugCUGCGCGACg -3'
miRNA:   3'- aGCUGCUUUacuUCGCG----GACGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 37729 0.76 0.262729
Target:  5'- gUCGGCaAGcUGccGCGCCUGCGCGAg -3'
miRNA:   3'- -AGCUGcUUuACuuCGCGGACGCGCUg -5'
17026 5' -53.2 NC_004333.2 + 8904 0.75 0.276828
Target:  5'- cUUGGCGAGGUu-GGCGUCgaUGCGCGACg -3'
miRNA:   3'- -AGCUGCUUUAcuUCGCGG--ACGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 11714 0.75 0.2991
Target:  5'- -gGGCGgcGUGcuGGCGuCCUGCGCGAUg -3'
miRNA:   3'- agCUGCuuUACu-UCGC-GGACGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 45475 0.74 0.322734
Target:  5'- cCGACGAGAUcGGccugucGGcCGCCgccgGCGCGACg -3'
miRNA:   3'- aGCUGCUUUA-CU------UC-GCGGa---CGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 9737 0.74 0.322734
Target:  5'- gUCGGCGAcAUG-AGCGCCggaUGCGCGcCc -3'
miRNA:   3'- -AGCUGCUuUACuUCGCGG---ACGCGCuG- -5'
17026 5' -53.2 NC_004333.2 + 870 0.74 0.325989
Target:  5'- gCGGCGcuugcgaggaggcuuGAcgGAAGUGCCgaauUGCGCGACa -3'
miRNA:   3'- aGCUGC---------------UUuaCUUCGCGG----ACGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 15638 0.74 0.330916
Target:  5'- aUCGACGc---GAGcGCGCC-GCGCGACg -3'
miRNA:   3'- -AGCUGCuuuaCUU-CGCGGaCGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 34698 0.74 0.356369
Target:  5'- aUGACGAGAUcGAA-CGCCUGCGCa-- -3'
miRNA:   3'- aGCUGCUUUA-CUUcGCGGACGCGcug -5'
17026 5' -53.2 NC_004333.2 + 37977 0.73 0.365154
Target:  5'- cCGACGGccgcauGCGCgUGCGCGACu -3'
miRNA:   3'- aGCUGCUuuacuuCGCGgACGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 32503 0.72 0.411272
Target:  5'- gCGGCGAAAUuucguugacccgGAAGCGUUUGC-CGACg -3'
miRNA:   3'- aGCUGCUUUA------------CUUCGCGGACGcGCUG- -5'
17026 5' -53.2 NC_004333.2 + 18811 0.72 0.42092
Target:  5'- gCGACGAGccgcuUGAAGUGCgC-GUGCGACa -3'
miRNA:   3'- aGCUGCUUu----ACUUCGCG-GaCGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 39232 0.72 0.42092
Target:  5'- gCGcACGcGAUGGacAGCGCCgGCGCGAa -3'
miRNA:   3'- aGC-UGCuUUACU--UCGCGGaCGCGCUg -5'
17026 5' -53.2 NC_004333.2 + 10789 0.72 0.42092
Target:  5'- cCGACGuaggacGAUGAGGacgGCC-GCGCGACg -3'
miRNA:   3'- aGCUGCu-----UUACUUCg--CGGaCGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 45091 0.72 0.427754
Target:  5'- aCGGCGGAcugcGAGGCgauacucgacgccuGUCUGCGCGGCg -3'
miRNA:   3'- aGCUGCUUua--CUUCG--------------CGGACGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 37287 0.72 0.428736
Target:  5'- gUCGGCGcAAGUGAcugucGCGCCggcguucuucccGCGCGGCg -3'
miRNA:   3'- -AGCUGC-UUUACUu----CGCGGa-----------CGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.