miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17026 5' -53.2 NC_004333.2 + 26514 0.77 0.230035
Target:  5'- gUCGAUGAAGUccGgcGCGCCgacagGUGCGGCg -3'
miRNA:   3'- -AGCUGCUUUA--CuuCGCGGa----CGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 10873 0.7 0.557097
Target:  5'- cCGcGCGGGAaGAA-CGCCgGCGCGACa -3'
miRNA:   3'- aGC-UGCUUUaCUUcGCGGaCGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 40664 0.7 0.568206
Target:  5'- cCGACGAAcUGuucGGCGCaCU-CGCGACc -3'
miRNA:   3'- aGCUGCUUuACu--UCGCG-GAcGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 25564 0.66 0.798225
Target:  5'- aUUGGCGAucagcUGcgcaaacAGCGCCUGCcacgcaGCGACg -3'
miRNA:   3'- -AGCUGCUuu---ACu------UCGCGGACG------CGCUG- -5'
17026 5' -53.2 NC_004333.2 + 37729 0.76 0.262729
Target:  5'- gUCGGCaAGcUGccGCGCCUGCGCGAg -3'
miRNA:   3'- -AGCUGcUUuACuuCGCGGACGCGCUg -5'
17026 5' -53.2 NC_004333.2 + 8904 0.75 0.276828
Target:  5'- cUUGGCGAGGUu-GGCGUCgaUGCGCGACg -3'
miRNA:   3'- -AGCUGCUUUAcuUCGCGG--ACGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 9737 0.74 0.322734
Target:  5'- gUCGGCGAcAUG-AGCGCCggaUGCGCGcCc -3'
miRNA:   3'- -AGCUGCUuUACuUCGCGG---ACGCGCuG- -5'
17026 5' -53.2 NC_004333.2 + 32503 0.72 0.411272
Target:  5'- gCGGCGAAAUuucguugacccgGAAGCGUUUGC-CGACg -3'
miRNA:   3'- aGCUGCUUUA------------CUUCGCGGACGcGCUG- -5'
17026 5' -53.2 NC_004333.2 + 18538 0.71 0.470085
Target:  5'- cCGGCGGcaacccgGGUGcGGCaGCCgGCGCGGCg -3'
miRNA:   3'- aGCUGCU-------UUACuUCG-CGGaCGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 12358 0.7 0.557097
Target:  5'- gCGACGGucgGggGCGCCguaGCGCc-- -3'
miRNA:   3'- aGCUGCUuuaCuuCGCGGa--CGCGcug -5'
17026 5' -53.2 NC_004333.2 + 1054 0.71 0.492037
Target:  5'- uUCGACGAAuc--AGCGCUUGUaguccuugGCGACa -3'
miRNA:   3'- -AGCUGCUUuacuUCGCGGACG--------CGCUG- -5'
17026 5' -53.2 NC_004333.2 + 2595 0.72 0.430703
Target:  5'- -aGGCGGucGUGAAGguCGCCcaauUGCGCGACa -3'
miRNA:   3'- agCUGCUu-UACUUC--GCGG----ACGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 47479 0.76 0.242681
Target:  5'- gCGGCGAcugccgcgcugAAcGAGGCGCCggccgGCGCGACc -3'
miRNA:   3'- aGCUGCU-----------UUaCUUCGCGGa----CGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 154 0.71 0.502655
Target:  5'- uUCGGCGcGAgcacacGAucGGCGCCUgGCGCGAg -3'
miRNA:   3'- -AGCUGCuUUa-----CU--UCGCGGA-CGCGCUg -5'
17026 5' -53.2 NC_004333.2 + 9237 0.76 0.249218
Target:  5'- gCGcCGAAcgGggGCGCCUcgccgcGUGCGGCa -3'
miRNA:   3'- aGCuGCUUuaCuuCGCGGA------CGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 45091 0.72 0.427754
Target:  5'- aCGGCGGAcugcGAGGCgauacucgacgccuGUCUGCGCGGCg -3'
miRNA:   3'- aGCUGCUUua--CUUCG--------------CGGACGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 19927 0.7 0.546052
Target:  5'- aUCGACGAc--GAGcGCGCC-GgGCGGCg -3'
miRNA:   3'- -AGCUGCUuuaCUU-CGCGGaCgCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 41301 0.7 0.568206
Target:  5'- uUCGACGAGGccGAGCucGCCcggcGCGCGAUg -3'
miRNA:   3'- -AGCUGCUUUacUUCG--CGGa---CGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 42078 0.76 0.262729
Target:  5'- aCGACGAGGau-AGCGUcgugCUGCGCGACg -3'
miRNA:   3'- aGCUGCUUUacuUCGCG----GACGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 11714 0.75 0.2991
Target:  5'- -gGGCGgcGUGcuGGCGuCCUGCGCGAUg -3'
miRNA:   3'- agCUGCuuUACu-UCGC-GGACGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.