miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17026 5' -53.2 NC_004333.2 + 154 0.71 0.502655
Target:  5'- uUCGGCGcGAgcacacGAucGGCGCCUgGCGCGAg -3'
miRNA:   3'- -AGCUGCuUUa-----CU--UCGCGGA-CGCGCUg -5'
17026 5' -53.2 NC_004333.2 + 438 0.66 0.788217
Target:  5'- gUCGGcCGggGUGuacGAG-GCCacggcGCGCGACg -3'
miRNA:   3'- -AGCU-GCuuUAC---UUCgCGGa----CGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 576 0.69 0.613097
Target:  5'- cUCGGCGAcgcgcagcugAAUGAA-CGCCUGCGgGuCc -3'
miRNA:   3'- -AGCUGCU----------UUACUUcGCGGACGCgCuG- -5'
17026 5' -53.2 NC_004333.2 + 742 0.7 0.557097
Target:  5'- gCGuCGAAcgGAuuGGCGCCgGCgaGCGGCg -3'
miRNA:   3'- aGCuGCUUuaCU--UCGCGGaCG--CGCUG- -5'
17026 5' -53.2 NC_004333.2 + 870 0.74 0.325989
Target:  5'- gCGGCGcuugcgaggaggcuuGAcgGAAGUGCCgaauUGCGCGACa -3'
miRNA:   3'- aGCUGC---------------UUuaCUUCGCGG----ACGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 982 0.66 0.798225
Target:  5'- gCGGCGAcuu---GUGCCucugcUGCGCGGCa -3'
miRNA:   3'- aGCUGCUuuacuuCGCGG-----ACGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 1054 0.71 0.492037
Target:  5'- uUCGACGAAuc--AGCGCUUGUaguccuugGCGACa -3'
miRNA:   3'- -AGCUGCUUuacuUCGCGGACG--------CGCUG- -5'
17026 5' -53.2 NC_004333.2 + 1117 0.67 0.724995
Target:  5'- gUCGcgcGCGAAGUc-GGUGCCgugcugcGCGCGACg -3'
miRNA:   3'- -AGC---UGCUUUAcuUCGCGGa------CGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 1390 0.66 0.798225
Target:  5'- -aGACGGcacgcuUGGAcGUGCCgagcaGCGCGGCg -3'
miRNA:   3'- agCUGCUuu----ACUU-CGCGGa----CGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 2329 0.67 0.70301
Target:  5'- cUGGCGGAAUGcGAGCaCC-GUGCGGCc -3'
miRNA:   3'- aGCUGCUUUAC-UUCGcGGaCGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 2595 0.72 0.430703
Target:  5'- -aGGCGGucGUGAAGguCGCCcaauUGCGCGACa -3'
miRNA:   3'- agCUGCUu-UACUUC--GCGG----ACGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 2786 0.67 0.70301
Target:  5'- aCGACc--GUGAAGCGgUUGCGCagGGCa -3'
miRNA:   3'- aGCUGcuuUACUUCGCgGACGCG--CUG- -5'
17026 5' -53.2 NC_004333.2 + 3598 0.69 0.590578
Target:  5'- gCGGCGAucguauucgcccAGUcGGGCGCCUGCG-GGCc -3'
miRNA:   3'- aGCUGCU------------UUAcUUCGCGGACGCgCUG- -5'
17026 5' -53.2 NC_004333.2 + 4786 0.68 0.64698
Target:  5'- uUCGGCaGGGUGAGcccGCGUC-GCGUGACg -3'
miRNA:   3'- -AGCUGcUUUACUU---CGCGGaCGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 5680 0.67 0.714045
Target:  5'- uUCGAUGAucgucAGCGCaucaGCGCGGCu -3'
miRNA:   3'- -AGCUGCUuuacuUCGCGga--CGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 7381 0.69 0.587211
Target:  5'- aUCGACGggGcgagcgacaUGAcGCGUgccugcggccagguCUGCGCGAUg -3'
miRNA:   3'- -AGCUGCuuU---------ACUuCGCG--------------GACGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 8787 0.66 0.778037
Target:  5'- gUCGcCGGcAAUGccuuGCGCCgGCGUGAUg -3'
miRNA:   3'- -AGCuGCU-UUACuu--CGCGGaCGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 8904 0.75 0.276828
Target:  5'- cUUGGCGAGGUu-GGCGUCgaUGCGCGACg -3'
miRNA:   3'- -AGCUGCUUUAcuUCGCGG--ACGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 9237 0.76 0.249218
Target:  5'- gCGcCGAAcgGggGCGCCUcgccgcGUGCGGCa -3'
miRNA:   3'- aGCuGCUUuaCuuCGCGGA------CGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 9539 0.71 0.471119
Target:  5'- cUCGACGAgcugcuucAAUGcGGCGCCgauCGUGGCg -3'
miRNA:   3'- -AGCUGCU--------UUACuUCGCGGac-GCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.