miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17028 5' -51.9 NC_004333.2 + 8206 0.66 0.864797
Target:  5'- aGACGUuuuGAAcgcUGCGcggcaggauGACGcCGGCCCGCGc -3'
miRNA:   3'- -UUGCA---CUU---ACGC---------UUGCaGUUGGGCGC- -5'
17028 5' -51.9 NC_004333.2 + 4448 0.66 0.863117
Target:  5'- cAACGcGGGccauuguUGCGAcGCGUCAggugccaACCCGCGc -3'
miRNA:   3'- -UUGCaCUU-------ACGCU-UGCAGU-------UGGGCGC- -5'
17028 5' -51.9 NC_004333.2 + 30690 0.66 0.856293
Target:  5'- uGCGgucGAGUGCGAgcaGCGUgAGCgCgGCGg -3'
miRNA:   3'- uUGCa--CUUACGCU---UGCAgUUG-GgCGC- -5'
17028 5' -51.9 NC_004333.2 + 26479 0.66 0.847538
Target:  5'- -uCGUGAAUGU--GCGUCgcGugCCGCa -3'
miRNA:   3'- uuGCACUUACGcuUGCAG--UugGGCGc -5'
17028 5' -51.9 NC_004333.2 + 2553 0.66 0.847538
Target:  5'- gAACGUGAucUGCGAGCaGUuguugcgacCGACCgGCa -3'
miRNA:   3'- -UUGCACUu-ACGCUUG-CA---------GUUGGgCGc -5'
17028 5' -51.9 NC_004333.2 + 22538 0.66 0.838541
Target:  5'- gAACGUGAuguUGcCGAGCGaCGAgCgCGCGg -3'
miRNA:   3'- -UUGCACUu--AC-GCUUGCaGUUgG-GCGC- -5'
17028 5' -51.9 NC_004333.2 + 25187 0.66 0.838541
Target:  5'- cGCGUcucGAAcucgcUGCGcgacucGACGUCGacGCCCGCGa -3'
miRNA:   3'- uUGCA---CUU-----ACGC------UUGCAGU--UGGGCGC- -5'
17028 5' -51.9 NC_004333.2 + 9466 0.66 0.829311
Target:  5'- --gGUGAagGCGAGCGcCGGCggCUGCGg -3'
miRNA:   3'- uugCACUuaCGCUUGCaGUUG--GGCGC- -5'
17028 5' -51.9 NC_004333.2 + 44435 0.67 0.81986
Target:  5'- --gGUGcGUGCGAgGCGcUCGGCCUGCc -3'
miRNA:   3'- uugCACuUACGCU-UGC-AGUUGGGCGc -5'
17028 5' -51.9 NC_004333.2 + 23354 0.67 0.80922
Target:  5'- uGCGcGuuUGUGAGCGUCAccgugccGCCCGUc -3'
miRNA:   3'- uUGCaCuuACGCUUGCAGU-------UGGGCGc -5'
17028 5' -51.9 NC_004333.2 + 30083 0.67 0.800334
Target:  5'- ----cGAAUGCGGACGUgGcgcGCUCGCa -3'
miRNA:   3'- uugcaCUUACGCUUGCAgU---UGGGCGc -5'
17028 5' -51.9 NC_004333.2 + 47568 0.67 0.800334
Target:  5'- cGGCGauGGUGCGAAaucgGUgGACCCGCa -3'
miRNA:   3'- -UUGCacUUACGCUUg---CAgUUGGGCGc -5'
17028 5' -51.9 NC_004333.2 + 41499 0.67 0.790283
Target:  5'- cACGUGAAgcgGCGGAUG-CGcGCCUGCu -3'
miRNA:   3'- uUGCACUUa--CGCUUGCaGU-UGGGCGc -5'
17028 5' -51.9 NC_004333.2 + 19375 0.68 0.77071
Target:  5'- cGACGUGGAcgcacuauacGCGAugGgaagucgcgccgccgCGACCCGCGc -3'
miRNA:   3'- -UUGCACUUa---------CGCUugCa--------------GUUGGGCGC- -5'
17028 5' -51.9 NC_004333.2 + 15615 0.68 0.726705
Target:  5'- cACGguuucgGCGAACGUCGugCCGUu -3'
miRNA:   3'- uUGCacuua-CGCUUGCAGUugGGCGc -5'
17028 5' -51.9 NC_004333.2 + 22609 0.68 0.715681
Target:  5'- aGGCGcUGuuUGCGcagcugaucgccAAUGUCGACCCGCu -3'
miRNA:   3'- -UUGC-ACuuACGC------------UUGCAGUUGGGCGc -5'
17028 5' -51.9 NC_004333.2 + 30094 0.68 0.715681
Target:  5'- cGACG-GAAcGCGucgauGCG-CGACCCGCGc -3'
miRNA:   3'- -UUGCaCUUaCGCu----UGCaGUUGGGCGC- -5'
17028 5' -51.9 NC_004333.2 + 18179 0.69 0.682129
Target:  5'- cGGCGUGccggguGAUGCGcuCGUCGugCgCGCGg -3'
miRNA:   3'- -UUGCAC------UUACGCuuGCAGUugG-GCGC- -5'
17028 5' -51.9 NC_004333.2 + 38961 0.69 0.670827
Target:  5'- cGCGaUGGAUGCGAA-GUCGgugcGCaCCGCGa -3'
miRNA:   3'- uUGC-ACUUACGCUUgCAGU----UG-GGCGC- -5'
17028 5' -51.9 NC_004333.2 + 37522 0.7 0.652667
Target:  5'- cACGUGAagaucagucguuccgGUGCGcugcucguGCGUCAGCUCGCc -3'
miRNA:   3'- uUGCACU---------------UACGCu-------UGCAGUUGGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.