miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17029 5' -61.1 NC_004333.2 + 1781 0.66 0.399912
Target:  5'- aGCCCCGcUCGGGUGcccuuuGCucaccgacuguccuaGGCcGCGCCa -3'
miRNA:   3'- gCGGGGCuAGUCCAU------CG---------------CCG-UGCGGa -5'
17029 5' -61.1 NC_004333.2 + 47832 0.66 0.396354
Target:  5'- aGCgCCGA-CGGGcauuucgGGCGGUACgGCCa -3'
miRNA:   3'- gCGgGGCUaGUCCa------UCGCCGUG-CGGa -5'
17029 5' -61.1 NC_004333.2 + 27250 0.66 0.396354
Target:  5'- aGCCgCCGGgcgUCGGGUuGCaauccuGCGCGCCa -3'
miRNA:   3'- gCGG-GGCU---AGUCCAuCGc-----CGUGCGGa -5'
17029 5' -61.1 NC_004333.2 + 35795 0.66 0.396354
Target:  5'- gCGCgCCGggCGGGgcGCGGgCggGCGCUa -3'
miRNA:   3'- -GCGgGGCuaGUCCauCGCC-G--UGCGGa -5'
17029 5' -61.1 NC_004333.2 + 23387 0.66 0.396354
Target:  5'- aGUCCgGA-CAGG--GCGGuCACGCCg -3'
miRNA:   3'- gCGGGgCUaGUCCauCGCC-GUGCGGa -5'
17029 5' -61.1 NC_004333.2 + 41491 0.66 0.387548
Target:  5'- gCGCCCCG--CAcGUgaAGCGGCggaugcGCGCCUg -3'
miRNA:   3'- -GCGGGGCuaGUcCA--UCGCCG------UGCGGA- -5'
17029 5' -61.1 NC_004333.2 + 14796 0.66 0.384931
Target:  5'- uCGCCguucuacgCGAUCGGGcAGCaggcguuccacgacGGCGCGCCg -3'
miRNA:   3'- -GCGGg-------GCUAGUCCaUCG--------------CCGUGCGGa -5'
17029 5' -61.1 NC_004333.2 + 9625 0.66 0.378871
Target:  5'- gCGCaCCGG-CuGccGGCGGCGCGCCUg -3'
miRNA:   3'- -GCGgGGCUaGuCcaUCGCCGUGCGGA- -5'
17029 5' -61.1 NC_004333.2 + 38638 0.66 0.370326
Target:  5'- cCGUUCUGAUCGGcccgGGCGGCACGg-- -3'
miRNA:   3'- -GCGGGGCUAGUCca--UCGCCGUGCgga -5'
17029 5' -61.1 NC_004333.2 + 46875 0.66 0.365263
Target:  5'- aGCUgcaauucacgCCGAUCGcGUaacgcaaccgcgccaGGCGGCGCGCCa -3'
miRNA:   3'- gCGG----------GGCUAGUcCA---------------UCGCCGUGCGGa -5'
17029 5' -61.1 NC_004333.2 + 14252 0.66 0.361914
Target:  5'- gCGCCUCuuUCgAGccgagcGGCGGCACGCCUu -3'
miRNA:   3'- -GCGGGGcuAG-UCca----UCGCCGUGCGGA- -5'
17029 5' -61.1 NC_004333.2 + 13954 0.66 0.361914
Target:  5'- cCGCCuuGGcgacuUCAGGcGGCGGCcgguGCGCg- -3'
miRNA:   3'- -GCGGggCU-----AGUCCaUCGCCG----UGCGga -5'
17029 5' -61.1 NC_004333.2 + 9825 0.66 0.361914
Target:  5'- gCGCgUCGAUCAGuucggcuucGGuCGGCACGCCc -3'
miRNA:   3'- -GCGgGGCUAGUCca-------UC-GCCGUGCGGa -5'
17029 5' -61.1 NC_004333.2 + 5884 0.66 0.353635
Target:  5'- aCGCCUCGGUCGGcaccuuGCGGCcgguCGCUUu -3'
miRNA:   3'- -GCGGGGCUAGUCcau---CGCCGu---GCGGA- -5'
17029 5' -61.1 NC_004333.2 + 2848 0.66 0.353635
Target:  5'- gGCUUCGAUCAGcGUuGCGGCGuuCGCg- -3'
miRNA:   3'- gCGGGGCUAGUC-CAuCGCCGU--GCGga -5'
17029 5' -61.1 NC_004333.2 + 9279 0.66 0.353635
Target:  5'- cCGUgCCGAUCAGcGcgaAGCGGCGCGg-- -3'
miRNA:   3'- -GCGgGGCUAGUC-Ca--UCGCCGUGCgga -5'
17029 5' -61.1 NC_004333.2 + 8290 0.67 0.345491
Target:  5'- -uCCuuGAUgUAGGUAgGCGGCGCGCg- -3'
miRNA:   3'- gcGGggCUA-GUCCAU-CGCCGUGCGga -5'
17029 5' -61.1 NC_004333.2 + 28762 0.67 0.336689
Target:  5'- gCGCCgcgucgaCCGcgCGGGUcgcGGCGGCGCGaCUUc -3'
miRNA:   3'- -GCGG-------GGCuaGUCCA---UCGCCGUGC-GGA- -5'
17029 5' -61.1 NC_004333.2 + 45528 0.67 0.32961
Target:  5'- gCGCCCCGcauUCGagcGGUGGUGGU-CGCUUu -3'
miRNA:   3'- -GCGGGGCu--AGU---CCAUCGCCGuGCGGA- -5'
17029 5' -61.1 NC_004333.2 + 695 0.67 0.321874
Target:  5'- gCGCCUCGuUCAGc--GCGGCAguCGCCg -3'
miRNA:   3'- -GCGGGGCuAGUCcauCGCCGU--GCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.