miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17033 5' -53.2 NC_004333.2 + 32558 1.09 0.001791
Target:  5'- cCAACGGCACGACGUUCGCCGAAACCGu -3'
miRNA:   3'- -GUUGCCGUGCUGCAAGCGGCUUUGGC- -5'
17033 5' -53.2 NC_004333.2 + 9019 0.78 0.202952
Target:  5'- gGGCGGCAgGAUG-UCGUCGAGAUCGg -3'
miRNA:   3'- gUUGCCGUgCUGCaAGCGGCUUUGGC- -5'
17033 5' -53.2 NC_004333.2 + 42033 0.78 0.225874
Target:  5'- cCAACGaGCGgGGCGUgcUCGCCGAAAgCGa -3'
miRNA:   3'- -GUUGC-CGUgCUGCA--AGCGGCUUUgGC- -5'
17033 5' -53.2 NC_004333.2 + 41821 0.78 0.231937
Target:  5'- cCGACGGCACGACGg-CGCCc-GGCCGc -3'
miRNA:   3'- -GUUGCCGUGCUGCaaGCGGcuUUGGC- -5'
17033 5' -53.2 NC_004333.2 + 25127 0.77 0.244476
Target:  5'- aCGGCGGCGCGcACGUUCGCgGccuGCCc -3'
miRNA:   3'- -GUUGCCGUGC-UGCAAGCGgCuu-UGGc -5'
17033 5' -53.2 NC_004333.2 + 38758 0.75 0.307936
Target:  5'- aAGCGGcCACGAgCGgcaUCGCCGAGcuuGCCGa -3'
miRNA:   3'- gUUGCC-GUGCU-GCa--AGCGGCUU---UGGC- -5'
17033 5' -53.2 NC_004333.2 + 2885 0.75 0.315716
Target:  5'- gCAGCGGCGaggcUGAUGUUgGCCGAGACg- -3'
miRNA:   3'- -GUUGCCGU----GCUGCAAgCGGCUUUGgc -5'
17033 5' -53.2 NC_004333.2 + 20791 0.75 0.322844
Target:  5'- uGACGGCACGGcCGUcgCGCCGGGcacuuccacggcuACCGc -3'
miRNA:   3'- gUUGCCGUGCU-GCAa-GCGGCUU-------------UGGC- -5'
17033 5' -53.2 NC_004333.2 + 2444 0.75 0.331718
Target:  5'- -uACGGCGCGGCGaacaccugcgCGCCGAAcgaaGCCGc -3'
miRNA:   3'- guUGCCGUGCUGCaa--------GCGGCUU----UGGC- -5'
17033 5' -53.2 NC_004333.2 + 37177 0.74 0.348309
Target:  5'- -cGCGGCgacacgccgcucACGACGcgCGCCGguGCCGa -3'
miRNA:   3'- guUGCCG------------UGCUGCaaGCGGCuuUGGC- -5'
17033 5' -53.2 NC_004333.2 + 11114 0.74 0.365484
Target:  5'- aCAGCGGCACGAaa-UCGCCuc-GCCGg -3'
miRNA:   3'- -GUUGCCGUGCUgcaAGCGGcuuUGGC- -5'
17033 5' -53.2 NC_004333.2 + 27666 0.74 0.377849
Target:  5'- gAGCGGCGCGGCGgcgGCCGGcagcgguugcgcggcAGCCGc -3'
miRNA:   3'- gUUGCCGUGCUGCaagCGGCU---------------UUGGC- -5'
17033 5' -53.2 NC_004333.2 + 18775 0.73 0.410911
Target:  5'- gCGACGGCgaACGGCGUUaCGCCGuuuGCUu -3'
miRNA:   3'- -GUUGCCG--UGCUGCAA-GCGGCuu-UGGc -5'
17033 5' -53.2 NC_004333.2 + 8991 0.73 0.419453
Target:  5'- gCGGCGGCgaccgacGCGGCGUUCGCgGcuuGCCa -3'
miRNA:   3'- -GUUGCCG-------UGCUGCAAGCGgCuu-UGGc -5'
17033 5' -53.2 NC_004333.2 + 26036 0.73 0.430038
Target:  5'- gAACGGUAauCGACGgugCGCCGGAuuuGCCa -3'
miRNA:   3'- gUUGCCGU--GCUGCaa-GCGGCUU---UGGc -5'
17033 5' -53.2 NC_004333.2 + 20444 0.73 0.430038
Target:  5'- uCGGCGGCGCGAagccugCGCCGGucgugacgcAGCCGg -3'
miRNA:   3'- -GUUGCCGUGCUgcaa--GCGGCU---------UUGGC- -5'
17033 5' -53.2 NC_004333.2 + 2394 0.73 0.439795
Target:  5'- uGACGGCGcCGGCGgUCGCCuGGucGCCGu -3'
miRNA:   3'- gUUGCCGU-GCUGCaAGCGG-CUu-UGGC- -5'
17033 5' -53.2 NC_004333.2 + 47939 0.72 0.449678
Target:  5'- gAACGGCACGGCGUggGgCGAc-CCGa -3'
miRNA:   3'- gUUGCCGUGCUGCAagCgGCUuuGGC- -5'
17033 5' -53.2 NC_004333.2 + 1254 0.72 0.449678
Target:  5'- uCAACGGCAUGACGUgcuccuuggcgCGCCGccuGGCgCGc -3'
miRNA:   3'- -GUUGCCGUGCUGCAa----------GCGGCu--UUG-GC- -5'
17033 5' -53.2 NC_004333.2 + 44691 0.72 0.453665
Target:  5'- aAGCGGCacagGCGauggaggacuugaagGCGUUCGCCGAGGCg- -3'
miRNA:   3'- gUUGCCG----UGC---------------UGCAAGCGGCUUUGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.