miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17033 5' -53.2 NC_004333.2 + 1254 0.72 0.449678
Target:  5'- uCAACGGCAUGACGUgcuccuuggcgCGCCGccuGGCgCGc -3'
miRNA:   3'- -GUUGCCGUGCUGCAa----------GCGGCu--UUG-GC- -5'
17033 5' -53.2 NC_004333.2 + 1412 0.7 0.609464
Target:  5'- gAGCaGCGCGGCGgacacuucgaCGCCGAGugCGu -3'
miRNA:   3'- gUUGcCGUGCUGCaa--------GCGGCUUugGC- -5'
17033 5' -53.2 NC_004333.2 + 1543 0.68 0.709015
Target:  5'- uCAGCGGCACcuCGUU-GaacaCGAAGCCGg -3'
miRNA:   3'- -GUUGCCGUGcuGCAAgCg---GCUUUGGC- -5'
17033 5' -53.2 NC_004333.2 + 2394 0.73 0.439795
Target:  5'- uGACGGCGcCGGCGgUCGCCuGGucGCCGu -3'
miRNA:   3'- gUUGCCGU-GCUGCaAGCGG-CUu-UGGC- -5'
17033 5' -53.2 NC_004333.2 + 2444 0.75 0.331718
Target:  5'- -uACGGCGCGGCGaacaccugcgCGCCGAAcgaaGCCGc -3'
miRNA:   3'- guUGCCGUGCUGCaa--------GCGGCUU----UGGC- -5'
17033 5' -53.2 NC_004333.2 + 2712 0.69 0.665052
Target:  5'- gGGCGGCAgGugGa-CGCCGuaguuGGCCGc -3'
miRNA:   3'- gUUGCCGUgCugCaaGCGGCu----UUGGC- -5'
17033 5' -53.2 NC_004333.2 + 2885 0.75 0.315716
Target:  5'- gCAGCGGCGaggcUGAUGUUgGCCGAGACg- -3'
miRNA:   3'- -GUUGCCGU----GCUGCAAgCGGCUUUGgc -5'
17033 5' -53.2 NC_004333.2 + 3580 0.66 0.792477
Target:  5'- gCAGCGGUACGGUGUUuucccacaCGCCGA--CCa -3'
miRNA:   3'- -GUUGCCGUGCUGCAA--------GCGGCUuuGGc -5'
17033 5' -53.2 NC_004333.2 + 3920 0.68 0.676118
Target:  5'- aGGCGGCAgCGGCGgcagGCCGA--CCGg -3'
miRNA:   3'- gUUGCCGU-GCUGCaag-CGGCUuuGGC- -5'
17033 5' -53.2 NC_004333.2 + 4964 0.66 0.830482
Target:  5'- -cACGGCACGAgGUUCGuaGucauAGCUu -3'
miRNA:   3'- guUGCCGUGCUgCAAGCggCu---UUGGc -5'
17033 5' -53.2 NC_004333.2 + 5044 0.7 0.565288
Target:  5'- aGGCGGC-CGGCuGUUgGCCGAcgUCGg -3'
miRNA:   3'- gUUGCCGuGCUG-CAAgCGGCUuuGGC- -5'
17033 5' -53.2 NC_004333.2 + 6563 0.71 0.521989
Target:  5'- aUAGCGGCGCG-CGUaCGCgCGAAAgcCCGc -3'
miRNA:   3'- -GUUGCCGUGCuGCAaGCG-GCUUU--GGC- -5'
17033 5' -53.2 NC_004333.2 + 6824 0.69 0.631709
Target:  5'- aCGGCGGCAcucCGGCGgggcacUCGUCGGcuACCGg -3'
miRNA:   3'- -GUUGCCGU---GCUGCa-----AGCGGCUu-UGGC- -5'
17033 5' -53.2 NC_004333.2 + 8558 0.68 0.73058
Target:  5'- --cCGGCugGAuCGUgUUGCCGAAuucaGCCa -3'
miRNA:   3'- guuGCCGugCU-GCA-AGCGGCUU----UGGc -5'
17033 5' -53.2 NC_004333.2 + 8841 0.67 0.751742
Target:  5'- -uGCGGUGCGuCGUagaagcgCGCCGccGCCGa -3'
miRNA:   3'- guUGCCGUGCuGCAa------GCGGCuuUGGC- -5'
17033 5' -53.2 NC_004333.2 + 8991 0.73 0.419453
Target:  5'- gCGGCGGCgaccgacGCGGCGUUCGCgGcuuGCCa -3'
miRNA:   3'- -GUUGCCG-------UGCUGCAAGCGgCuu-UGGc -5'
17033 5' -53.2 NC_004333.2 + 9019 0.78 0.202952
Target:  5'- gGGCGGCAgGAUG-UCGUCGAGAUCGg -3'
miRNA:   3'- gUUGCCGUgCUGCaAGCGGCUUUGGC- -5'
17033 5' -53.2 NC_004333.2 + 9757 0.69 0.665052
Target:  5'- -cGCGGCAa-GCGUcucgaUCGCCGucuuGACCGu -3'
miRNA:   3'- guUGCCGUgcUGCA-----AGCGGCu---UUGGC- -5'
17033 5' -53.2 NC_004333.2 + 9845 0.66 0.792477
Target:  5'- uCGGuCGGCACGcccucgagGCGcauUUCGCCGGucGCCGc -3'
miRNA:   3'- -GUU-GCCGUGC--------UGC---AAGCGGCUu-UGGC- -5'
17033 5' -53.2 NC_004333.2 + 9949 0.66 0.802262
Target:  5'- gAACGGCGCGGCGcgcUUGCuCGAcuCgGg -3'
miRNA:   3'- gUUGCCGUGCUGCa--AGCG-GCUuuGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.