Results 1 - 20 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17033 | 5' | -53.2 | NC_004333.2 | + | 42033 | 0.78 | 0.225874 |
Target: 5'- cCAACGaGCGgGGCGUgcUCGCCGAAAgCGa -3' miRNA: 3'- -GUUGC-CGUgCUGCA--AGCGGCUUUgGC- -5' |
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17033 | 5' | -53.2 | NC_004333.2 | + | 31182 | 0.72 | 0.490375 |
Target: 5'- aGACGGCGCGcCGUacucgacaaCGCCGAcauuuGCCGg -3' miRNA: 3'- gUUGCCGUGCuGCAa--------GCGGCUu----UGGC- -5' |
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17033 | 5' | -53.2 | NC_004333.2 | + | 27737 | 0.71 | 0.520922 |
Target: 5'- -cGCGGCGCGAaucugguCGgcCGCCGAGcCCGu -3' miRNA: 3'- guUGCCGUGCU-------GCaaGCGGCUUuGGC- -5' |
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17033 | 5' | -53.2 | NC_004333.2 | + | 46289 | 0.66 | 0.821276 |
Target: 5'- aCAACuGGCACGAUa-UCGCCGGuuACUc -3' miRNA: 3'- -GUUG-CCGUGCUGcaAGCGGCUu-UGGc -5' |
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17033 | 5' | -53.2 | NC_004333.2 | + | 2885 | 0.75 | 0.315716 |
Target: 5'- gCAGCGGCGaggcUGAUGUUgGCCGAGACg- -3' miRNA: 3'- -GUUGCCGU----GCUGCAAgCGGCUUUGgc -5' |
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17033 | 5' | -53.2 | NC_004333.2 | + | 2444 | 0.75 | 0.331718 |
Target: 5'- -uACGGCGCGGCGaacaccugcgCGCCGAAcgaaGCCGc -3' miRNA: 3'- guUGCCGUGCUGCaa--------GCGGCUU----UGGC- -5' |
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17033 | 5' | -53.2 | NC_004333.2 | + | 11114 | 0.74 | 0.365484 |
Target: 5'- aCAGCGGCACGAaa-UCGCCuc-GCCGg -3' miRNA: 3'- -GUUGCCGUGCUgcaAGCGGcuuUGGC- -5' |
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17033 | 5' | -53.2 | NC_004333.2 | + | 8991 | 0.73 | 0.419453 |
Target: 5'- gCGGCGGCgaccgacGCGGCGUUCGCgGcuuGCCa -3' miRNA: 3'- -GUUGCCG-------UGCUGCAAGCGgCuu-UGGc -5' |
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17033 | 5' | -53.2 | NC_004333.2 | + | 2394 | 0.73 | 0.439795 |
Target: 5'- uGACGGCGcCGGCGgUCGCCuGGucGCCGu -3' miRNA: 3'- gUUGCCGU-GCUGCaAGCGG-CUu-UGGC- -5' |
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17033 | 5' | -53.2 | NC_004333.2 | + | 31944 | 0.72 | 0.460688 |
Target: 5'- aCGACGG-GCGACGcaccuuguugaacaCGCCGAAGCCGc -3' miRNA: 3'- -GUUGCCgUGCUGCaa------------GCGGCUUUGGC- -5' |
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17033 | 5' | -53.2 | NC_004333.2 | + | 44691 | 0.72 | 0.453665 |
Target: 5'- aAGCGGCacagGCGauggaggacuugaagGCGUUCGCCGAGGCg- -3' miRNA: 3'- gUUGCCG----UGC---------------UGCAAGCGGCUUUGgc -5' |
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17033 | 5' | -53.2 | NC_004333.2 | + | 26036 | 0.73 | 0.430038 |
Target: 5'- gAACGGUAauCGACGgugCGCCGGAuuuGCCa -3' miRNA: 3'- gUUGCCGU--GCUGCaa-GCGGCUU---UGGc -5' |
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17033 | 5' | -53.2 | NC_004333.2 | + | 41821 | 0.78 | 0.231937 |
Target: 5'- cCGACGGCACGACGg-CGCCc-GGCCGc -3' miRNA: 3'- -GUUGCCGUGCUGCaaGCGGcuUUGGC- -5' |
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17033 | 5' | -53.2 | NC_004333.2 | + | 20730 | 0.72 | 0.459681 |
Target: 5'- uGACGGCGCG-CGcgCuGCCGGAcaucGCCGa -3' miRNA: 3'- gUUGCCGUGCuGCaaG-CGGCUU----UGGC- -5' |
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17033 | 5' | -53.2 | NC_004333.2 | + | 25127 | 0.77 | 0.244476 |
Target: 5'- aCGGCGGCGCGcACGUUCGCgGccuGCCc -3' miRNA: 3'- -GUUGCCGUGC-UGCAAGCGgCuu-UGGc -5' |
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17033 | 5' | -53.2 | NC_004333.2 | + | 20444 | 0.73 | 0.430038 |
Target: 5'- uCGGCGGCGCGAagccugCGCCGGucgugacgcAGCCGg -3' miRNA: 3'- -GUUGCCGUGCUgcaa--GCGGCU---------UUGGC- -5' |
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17033 | 5' | -53.2 | NC_004333.2 | + | 39132 | 0.72 | 0.459681 |
Target: 5'- gCGACGGCAuCGGC--UUGCCGAucACCGa -3' miRNA: 3'- -GUUGCCGU-GCUGcaAGCGGCUu-UGGC- -5' |
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17033 | 5' | -53.2 | NC_004333.2 | + | 47723 | 0.72 | 0.490375 |
Target: 5'- --cCGGCACGuCGcgCGCCGugGCCu -3' miRNA: 3'- guuGCCGUGCuGCaaGCGGCuuUGGc -5' |
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17033 | 5' | -53.2 | NC_004333.2 | + | 38758 | 0.75 | 0.307936 |
Target: 5'- aAGCGGcCACGAgCGgcaUCGCCGAGcuuGCCGa -3' miRNA: 3'- gUUGCC-GUGCU-GCa--AGCGGCUU---UGGC- -5' |
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17033 | 5' | -53.2 | NC_004333.2 | + | 37177 | 0.74 | 0.348309 |
Target: 5'- -cGCGGCgacacgccgcucACGACGcgCGCCGguGCCGa -3' miRNA: 3'- guUGCCG------------UGCUGCaaGCGGCuuUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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