miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17036 5' -51.4 NC_004333.2 + 18060 0.66 0.89515
Target:  5'- gCUGCUgcgcaguccgaccucUGGGCGAUucucuGCGAGCGCgccacguccgcaUUCGGg -3'
miRNA:   3'- -GACGA---------------GCUCGCUA-----UGCUUGCG------------AAGCU- -5'
17036 5' -51.4 NC_004333.2 + 25885 0.66 0.892206
Target:  5'- gUGCgCGAGCGccaaGCGccGCGCUUCGc -3'
miRNA:   3'- gACGaGCUCGCua--UGCu-UGCGAAGCu -5'
17036 5' -51.4 NC_004333.2 + 2912 0.66 0.884649
Target:  5'- -cGUUCGcgagccaaGGCGccACGcGCGCUUCGAu -3'
miRNA:   3'- gaCGAGC--------UCGCuaUGCuUGCGAAGCU- -5'
17036 5' -51.4 NC_004333.2 + 1407 0.66 0.884649
Target:  5'- gUGC-CGAgcaGCGcgGCGGACaCUUCGAc -3'
miRNA:   3'- gACGaGCU---CGCuaUGCUUGcGAAGCU- -5'
17036 5' -51.4 NC_004333.2 + 4942 0.66 0.876816
Target:  5'- aUGCggcgCGGGC-AUGCGAACGCacggcaCGAg -3'
miRNA:   3'- gACGa---GCUCGcUAUGCUUGCGaa----GCU- -5'
17036 5' -51.4 NC_004333.2 + 20977 0.66 0.876816
Target:  5'- -cGCggcgCGGGCGAgUGgGuGCGUUUCGAg -3'
miRNA:   3'- gaCGa---GCUCGCU-AUgCuUGCGAAGCU- -5'
17036 5' -51.4 NC_004333.2 + 17402 0.66 0.860349
Target:  5'- gCUGCUCGcgcagcGCGGUcACGAcGCGCUgaCGAu -3'
miRNA:   3'- -GACGAGCu-----CGCUA-UGCU-UGCGAa-GCU- -5'
17036 5' -51.4 NC_004333.2 + 15676 0.66 0.860349
Target:  5'- -aGCUucaCGAGCaucGCGAACGCUUUGu -3'
miRNA:   3'- gaCGA---GCUCGcuaUGCUUGCGAAGCu -5'
17036 5' -51.4 NC_004333.2 + 25291 0.67 0.851731
Target:  5'- uCUGCUcgucaCGAGCGccaGUACGAuCGCgcCGAu -3'
miRNA:   3'- -GACGA-----GCUCGC---UAUGCUuGCGaaGCU- -5'
17036 5' -51.4 NC_004333.2 + 37864 0.67 0.851731
Target:  5'- -gGaCUCGAGCccGAggccgGUGAGCGCUUCGGc -3'
miRNA:   3'- gaC-GAGCUCG--CUa----UGCUUGCGAAGCU- -5'
17036 5' -51.4 NC_004333.2 + 46912 0.67 0.842867
Target:  5'- aUGCUgcAGCGccGCGAGCGCcgCGAa -3'
miRNA:   3'- gACGAgcUCGCuaUGCUUGCGaaGCU- -5'
17036 5' -51.4 NC_004333.2 + 24034 0.67 0.841968
Target:  5'- gCUGCUCGugaaGGCGGccGCGAacauugcGCGCUgCGAc -3'
miRNA:   3'- -GACGAGC----UCGCUa-UGCU-------UGCGAaGCU- -5'
17036 5' -51.4 NC_004333.2 + 29766 0.67 0.833768
Target:  5'- -cGC-CGAucGCGAgGCGuuGCGCUUCGGa -3'
miRNA:   3'- gaCGaGCU--CGCUaUGCu-UGCGAAGCU- -5'
17036 5' -51.4 NC_004333.2 + 10698 0.67 0.823497
Target:  5'- uUGCUCGAucugcauGCGuuugGCGAGCGCcggaaugUCGGc -3'
miRNA:   3'- gACGAGCU-------CGCua--UGCUUGCGa------AGCU- -5'
17036 5' -51.4 NC_004333.2 + 687 0.67 0.823497
Target:  5'- gUGCUCGGugagcGCGAUcgugccgccgcccGCGAGCGCcguggCGAg -3'
miRNA:   3'- gACGAGCU-----CGCUA-------------UGCUUGCGaa---GCU- -5'
17036 5' -51.4 NC_004333.2 + 39929 0.67 0.814901
Target:  5'- aUGCuUUGGGCGAaGCGAucgagcaaGCGCU-CGAa -3'
miRNA:   3'- gACG-AGCUCGCUaUGCU--------UGCGAaGCU- -5'
17036 5' -51.4 NC_004333.2 + 10184 0.68 0.805155
Target:  5'- -aGC-CGAGCGAcGCGGGCaguGCUUgGAg -3'
miRNA:   3'- gaCGaGCUCGCUaUGCUUG---CGAAgCU- -5'
17036 5' -51.4 NC_004333.2 + 19320 0.68 0.785095
Target:  5'- -cGCUUGAGCGcgccggcUACGAACGCagcCGGc -3'
miRNA:   3'- gaCGAGCUCGCu------AUGCUUGCGaa-GCU- -5'
17036 5' -51.4 NC_004333.2 + 19232 0.68 0.774805
Target:  5'- -cGCUCGAGCaAUACGGgcuggACGUgaCGAa -3'
miRNA:   3'- gaCGAGCUCGcUAUGCU-----UGCGaaGCU- -5'
17036 5' -51.4 NC_004333.2 + 27468 0.68 0.774805
Target:  5'- -gGCUCGAGCGuGUGCuGAACGaccgccgCGAu -3'
miRNA:   3'- gaCGAGCUCGC-UAUG-CUUGCgaa----GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.