miRNA display CGI


Results 1 - 20 of 211 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17040 3' -55.9 NC_004333.2 + 29974 0.79 0.107107
Target:  5'- gCGGccgCGCUGCCAcCGGcgccGAGCGCGAGCa -3'
miRNA:   3'- aGCUa--GCGGCGGU-GCU----UUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 4085 0.71 0.369469
Target:  5'- gCGAagUCGCCGCCcuuacCGAGcgGGCGCGAc- -3'
miRNA:   3'- aGCU--AGCGGCGGu----GCUU--UCGCGCUcg -5'
17040 3' -55.9 NC_004333.2 + 47211 0.71 0.377343
Target:  5'- --aGUCGCCGCgACGGgcGCGCuacuuucGAGCg -3'
miRNA:   3'- agcUAGCGGCGgUGCUuuCGCG-------CUCG- -5'
17040 3' -55.9 NC_004333.2 + 39156 0.66 0.686737
Target:  5'- cCGAUCucgacgacauccuGCCGCC-CGugcuGCGCGcGCu -3'
miRNA:   3'- aGCUAG-------------CGGCGGuGCuuu-CGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 32756 0.76 0.18113
Target:  5'- -aGGUCGCUGCCGcCGGccauAAGCGCG-GCa -3'
miRNA:   3'- agCUAGCGGCGGU-GCU----UUCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 32349 0.76 0.191141
Target:  5'- -gGGUCGCUGCC-CGAuAGCGUGcGCa -3'
miRNA:   3'- agCUAGCGGCGGuGCUuUCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 6589 0.75 0.224128
Target:  5'- cCGcAUCGCCGCCACG---GCGCGccgcccAGCg -3'
miRNA:   3'- aGC-UAGCGGCGGUGCuuuCGCGC------UCG- -5'
17040 3' -55.9 NC_004333.2 + 168 0.74 0.261828
Target:  5'- aCGAUCGgCGCCu----GGCGCGAGUc -3'
miRNA:   3'- aGCUAGCgGCGGugcuuUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 2495 0.73 0.297056
Target:  5'- aUCGA-CGCUGCCuCGAGaucgGGCGCGAcGUa -3'
miRNA:   3'- -AGCUaGCGGCGGuGCUU----UCGCGCU-CG- -5'
17040 3' -55.9 NC_004333.2 + 30232 0.71 0.351538
Target:  5'- aUCGAcgCGCCGCgCGCGAucAGUGCGuucaugacguacaGGCg -3'
miRNA:   3'- -AGCUa-GCGGCG-GUGCUu-UCGCGC-------------UCG- -5'
17040 3' -55.9 NC_004333.2 + 37729 0.72 0.304528
Target:  5'- gUCGGcaaGCUGCCGCGccuGCGCGAGa -3'
miRNA:   3'- -AGCUag-CGGCGGUGCuuuCGCGCUCg -5'
17040 3' -55.9 NC_004333.2 + 46351 0.73 0.28254
Target:  5'- cCGuuaugCGCCGCUGCGGAuuuGGCGCG-GCc -3'
miRNA:   3'- aGCua---GCGGCGGUGCUU---UCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 43577 0.79 0.110169
Target:  5'- gUCGcgCGCuCGCCucgaacGCGAGuGCGCGAGCa -3'
miRNA:   3'- -AGCuaGCG-GCGG------UGCUUuCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 9445 0.72 0.319904
Target:  5'- cCGGuUCGCCGUCcuGCGcaccAGGCGCGGGUg -3'
miRNA:   3'- aGCU-AGCGGCGG--UGCu---UUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 28758 0.76 0.171585
Target:  5'- gCGAgCGCCGCguCGAccGCGCGGGUc -3'
miRNA:   3'- aGCUaGCGGCGguGCUuuCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 700 0.73 0.28254
Target:  5'- gCGAUCguGCCGCCGCc----CGCGAGCg -3'
miRNA:   3'- aGCUAG--CGGCGGUGcuuucGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 27533 0.72 0.335855
Target:  5'- gUCGAUCGCaaguGCCGCGccGGgGCGAaucuGCg -3'
miRNA:   3'- -AGCUAGCGg---CGGUGCuuUCgCGCU----CG- -5'
17040 3' -55.9 NC_004333.2 + 25473 0.71 0.369469
Target:  5'- -gGAUCGUCGCgGCGAcAGC-CGGGUu -3'
miRNA:   3'- agCUAGCGGCGgUGCUuUCGcGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 29014 0.76 0.1763
Target:  5'- aUCGcgCGCgGCuagCACGAuaaccAGCGCGAGCa -3'
miRNA:   3'- -AGCuaGCGgCG---GUGCUu----UCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 11873 0.75 0.201635
Target:  5'- cCGGUCgGCCGaaACG--GGCGCGAGCa -3'
miRNA:   3'- aGCUAG-CGGCggUGCuuUCGCGCUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.