miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17041 3' -60.9 NC_004333.2 + 17851 0.69 0.281042
Target:  5'- gGUGCGGCCGCGcguauggCgGGUGGUGUCgcaGGc -3'
miRNA:   3'- gCGCGUCGGCGCa------G-CCGCUACAGg--CC- -5'
17041 3' -60.9 NC_004333.2 + 32849 0.69 0.287911
Target:  5'- aGCGCGGCCuGCucgaGUCGGuCGAUGUUg-- -3'
miRNA:   3'- gCGCGUCGG-CG----CAGCC-GCUACAGgcc -5'
17041 3' -60.9 NC_004333.2 + 28988 0.69 0.290695
Target:  5'- uGCGCGGCCGCcggGUCGGCGugcgcaucgcgCgCGGc -3'
miRNA:   3'- gCGCGUCGGCG---CAGCCGCuaca-------G-GCC- -5'
17041 3' -60.9 NC_004333.2 + 3121 0.69 0.294911
Target:  5'- gGCGCGGCCGCG-CGGUGuucagcGUuuGc -3'
miRNA:   3'- gCGCGUCGGCGCaGCCGCua----CAggCc -5'
17041 3' -60.9 NC_004333.2 + 21644 0.69 0.294911
Target:  5'- cCGUGCAguucGCCGCaccuGUCGGCGcg--CCGGa -3'
miRNA:   3'- -GCGCGU----CGGCG----CAGCCGCuacaGGCC- -5'
17041 3' -60.9 NC_004333.2 + 28878 0.68 0.302043
Target:  5'- aGCGCucguGCCGCGcgaucgcgcUCGGCGcaggCCGGc -3'
miRNA:   3'- gCGCGu---CGGCGC---------AGCCGCuacaGGCC- -5'
17041 3' -60.9 NC_004333.2 + 38371 0.68 0.302043
Target:  5'- aCGCGCuGUCGCGUgucgggugcgcCGGCG-UGacgCCGGc -3'
miRNA:   3'- -GCGCGuCGGCGCA-----------GCCGCuACa--GGCC- -5'
17041 3' -60.9 NC_004333.2 + 2383 0.68 0.308574
Target:  5'- gGCGUAGCCcaugacgGCGcCGGCGGUcGcCUGGu -3'
miRNA:   3'- gCGCGUCGG-------CGCaGCCGCUA-CaGGCC- -5'
17041 3' -60.9 NC_004333.2 + 17062 0.68 0.309307
Target:  5'- uCGCGguguucCAGCCGCGccggaacaUCGGCGAa--CCGGg -3'
miRNA:   3'- -GCGC------GUCGGCGC--------AGCCGCUacaGGCC- -5'
17041 3' -60.9 NC_004333.2 + 16951 0.68 0.309307
Target:  5'- cCGCGCGGCCgucGCGcCGGC-AUGaccaaCCGGc -3'
miRNA:   3'- -GCGCGUCGG---CGCaGCCGcUACa----GGCC- -5'
17041 3' -60.9 NC_004333.2 + 30686 0.68 0.316703
Target:  5'- uCGCGCcGCCGCcggCGGCGGcaacuucGUCCuGGa -3'
miRNA:   3'- -GCGCGuCGGCGca-GCCGCUa------CAGG-CC- -5'
17041 3' -60.9 NC_004333.2 + 26613 0.68 0.324232
Target:  5'- aGCGUugcuguccagauGGCCGUaGUCGGCGA--UUCGGa -3'
miRNA:   3'- gCGCG------------UCGGCG-CAGCCGCUacAGGCC- -5'
17041 3' -60.9 NC_004333.2 + 13366 0.68 0.324232
Target:  5'- gGCGCGGCaCGag-CGGCG-UGUCCa- -3'
miRNA:   3'- gCGCGUCG-GCgcaGCCGCuACAGGcc -5'
17041 3' -60.9 NC_004333.2 + 20556 0.68 0.324232
Target:  5'- cCGCGCcGCUGauCGUCGGCGc-GUCgGGu -3'
miRNA:   3'- -GCGCGuCGGC--GCAGCCGCuaCAGgCC- -5'
17041 3' -60.9 NC_004333.2 + 48115 0.68 0.324232
Target:  5'- gCGCGCA-CCGCGcCGGCauGGUGaCCGu -3'
miRNA:   3'- -GCGCGUcGGCGCaGCCG--CUACaGGCc -5'
17041 3' -60.9 NC_004333.2 + 29673 0.68 0.331894
Target:  5'- cCGCuGCAGCgucCGUCGGCG-UG-CCGGc -3'
miRNA:   3'- -GCG-CGUCGgc-GCAGCCGCuACaGGCC- -5'
17041 3' -60.9 NC_004333.2 + 13947 0.68 0.332667
Target:  5'- aGCGUGGCCGCcUUGGCGAcuucaggcggcggCCGGu -3'
miRNA:   3'- gCGCGUCGGCGcAGCCGCUaca----------GGCC- -5'
17041 3' -60.9 NC_004333.2 + 8927 0.68 0.339687
Target:  5'- gCGaCGCGGCuucguuCGCGcCGGCGcUGUCCa- -3'
miRNA:   3'- -GC-GCGUCG------GCGCaGCCGCuACAGGcc -5'
17041 3' -60.9 NC_004333.2 + 13204 0.68 0.339687
Target:  5'- uGUGCAGgCGCGUCGcGUGGacUUCGGu -3'
miRNA:   3'- gCGCGUCgGCGCAGC-CGCUacAGGCC- -5'
17041 3' -60.9 NC_004333.2 + 18216 0.67 0.347613
Target:  5'- aGCGCGGCCGCGcUCGGCa-------- -3'
miRNA:   3'- gCGCGUCGGCGC-AGCCGcuacaggcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.