miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17041 3' -60.9 NC_004333.2 + 27428 1.09 0.00031
Target:  5'- gCGCGCAGCCGCGUCGGCGAUGUCCGGc -3'
miRNA:   3'- -GCGCGUCGGCGCAGCCGCUACAGGCC- -5'
17041 3' -60.9 NC_004333.2 + 9711 0.8 0.049037
Target:  5'- gGCGCAcgcgguucgcgaaacGCCGCGUCGGCGAcaUGagcgCCGGa -3'
miRNA:   3'- gCGCGU---------------CGGCGCAGCCGCU--ACa---GGCC- -5'
17041 3' -60.9 NC_004333.2 + 16816 0.75 0.102212
Target:  5'- aCGCGCGGCUGCGucgcUCGGCaGcgGUCUGa -3'
miRNA:   3'- -GCGCGUCGGCGC----AGCCG-CuaCAGGCc -5'
17041 3' -60.9 NC_004333.2 + 11708 0.73 0.144901
Target:  5'- aGCGCcgGGCgGCGUgcuggcguccUGcGCGAUGUCCGGc -3'
miRNA:   3'- gCGCG--UCGgCGCA----------GC-CGCUACAGGCC- -5'
17041 3' -60.9 NC_004333.2 + 8514 0.73 0.147221
Target:  5'- aGCGC-GCCGCcUCGGCGAccgugaaguucgcGUCCGGc -3'
miRNA:   3'- gCGCGuCGGCGcAGCCGCUa------------CAGGCC- -5'
17041 3' -60.9 NC_004333.2 + 31049 0.72 0.165292
Target:  5'- uGCGCuGCUGC-UCGGCGGugacgUGUUCGGc -3'
miRNA:   3'- gCGCGuCGGCGcAGCCGCU-----ACAGGCC- -5'
17041 3' -60.9 NC_004333.2 + 41590 0.72 0.174148
Target:  5'- gGCGC-GCCGUGgCGGCGAUG-CgGGc -3'
miRNA:   3'- gCGCGuCGGCGCaGCCGCUACaGgCC- -5'
17041 3' -60.9 NC_004333.2 + 8393 0.72 0.178733
Target:  5'- aGCGCgAGCgGCGUCGGUcgGAUcGUCCa- -3'
miRNA:   3'- gCGCG-UCGgCGCAGCCG--CUA-CAGGcc -5'
17041 3' -60.9 NC_004333.2 + 31234 0.72 0.18295
Target:  5'- uCGCGaCGGCCGCG-CGGCGcagcgccgucucgGUGUUCGu -3'
miRNA:   3'- -GCGC-GUCGGCGCaGCCGC-------------UACAGGCc -5'
17041 3' -60.9 NC_004333.2 + 47959 0.71 0.198156
Target:  5'- gCGCGCuGGUCGuCGgcgucaUCGGCGGUGUgCGGc -3'
miRNA:   3'- -GCGCG-UCGGC-GC------AGCCGCUACAgGCC- -5'
17041 3' -60.9 NC_004333.2 + 30336 0.71 0.198156
Target:  5'- aCGCGCGGCCGCacCGGCagacaguuucacGcgGUUCGGa -3'
miRNA:   3'- -GCGCGUCGGCGcaGCCG------------CuaCAGGCC- -5'
17041 3' -60.9 NC_004333.2 + 2171 0.7 0.235984
Target:  5'- aGCGCAGgCCGUGccagcccUCGGCGccgaGUGgcaggCCGGg -3'
miRNA:   3'- gCGCGUC-GGCGC-------AGCCGC----UACa----GGCC- -5'
17041 3' -60.9 NC_004333.2 + 32368 0.7 0.240742
Target:  5'- uGCGCAgcacgacguucagcGCCGCGUCGGgguucuCGGUGUCgGc -3'
miRNA:   3'- gCGCGU--------------CGGCGCAGCC------GCUACAGgCc -5'
17041 3' -60.9 NC_004333.2 + 37370 0.7 0.242546
Target:  5'- aCGUGCA-CCGCGUCGcGCGGccGUCCu- -3'
miRNA:   3'- -GCGCGUcGGCGCAGC-CGCUa-CAGGcc -5'
17041 3' -60.9 NC_004333.2 + 28755 0.7 0.248644
Target:  5'- uGCGCGagcGCCGCGUCGaccgcGCGG-GUCgCGGc -3'
miRNA:   3'- gCGCGU---CGGCGCAGC-----CGCUaCAG-GCC- -5'
17041 3' -60.9 NC_004333.2 + 2698 0.7 0.254867
Target:  5'- gGCgGCGGCCGacaggccgaucuCGUCGGCGAaguUGUUCGu -3'
miRNA:   3'- gCG-CGUCGGC------------GCAGCCGCU---ACAGGCc -5'
17041 3' -60.9 NC_004333.2 + 16868 0.69 0.261217
Target:  5'- gGCGCcguGCUcgGCGUCGGCGcagGUGcggCCGGu -3'
miRNA:   3'- gCGCGu--CGG--CGCAGCCGC---UACa--GGCC- -5'
17041 3' -60.9 NC_004333.2 + 26330 0.69 0.267696
Target:  5'- aGCGCGcGCCGCGUCG-CGGUaUUCGa -3'
miRNA:   3'- gCGCGU-CGGCGCAGCcGCUAcAGGCc -5'
17041 3' -60.9 NC_004333.2 + 13872 0.69 0.274304
Target:  5'- aGCGC-GCCGCGcCGcGCGAaGUcggCCGGc -3'
miRNA:   3'- gCGCGuCGGCGCaGC-CGCUaCA---GGCC- -5'
17041 3' -60.9 NC_004333.2 + 40342 0.69 0.279007
Target:  5'- gGCGCAGgCCGCGUCgaucuGGCGAgcgagcuaaacuacUcGUCCGc -3'
miRNA:   3'- gCGCGUC-GGCGCAG-----CCGCU--------------A-CAGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.