miRNA display CGI


Results 1 - 20 of 84 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17041 3' -60.9 NC_004333.2 + 9711 0.8 0.049037
Target:  5'- gGCGCAcgcgguucgcgaaacGCCGCGUCGGCGAcaUGagcgCCGGa -3'
miRNA:   3'- gCGCGU---------------CGGCGCAGCCGCU--ACa---GGCC- -5'
17041 3' -60.9 NC_004333.2 + 13366 0.68 0.324232
Target:  5'- gGCGCGGCaCGag-CGGCG-UGUCCa- -3'
miRNA:   3'- gCGCGUCG-GCgcaGCCGCuACAGGcc -5'
17041 3' -60.9 NC_004333.2 + 48115 0.68 0.324232
Target:  5'- gCGCGCA-CCGCGcCGGCauGGUGaCCGu -3'
miRNA:   3'- -GCGCGUcGGCGCaGCCG--CUACaGGCc -5'
17041 3' -60.9 NC_004333.2 + 33291 0.66 0.433898
Target:  5'- gCGCGCGcGuuGCGUCGGCcgcaucGAgccaaCCGGc -3'
miRNA:   3'- -GCGCGU-CggCGCAGCCG------CUaca--GGCC- -5'
17041 3' -60.9 NC_004333.2 + 47959 0.71 0.198156
Target:  5'- gCGCGCuGGUCGuCGgcgucaUCGGCGGUGUgCGGc -3'
miRNA:   3'- -GCGCG-UCGGC-GC------AGCCGCUACAgGCC- -5'
17041 3' -60.9 NC_004333.2 + 32368 0.7 0.240742
Target:  5'- uGCGCAgcacgacguucagcGCCGCGUCGGgguucuCGGUGUCgGc -3'
miRNA:   3'- gCGCGU--------------CGGCGCAGCC------GCUACAGgCc -5'
17041 3' -60.9 NC_004333.2 + 28755 0.7 0.248644
Target:  5'- uGCGCGagcGCCGCGUCGaccgcGCGG-GUCgCGGc -3'
miRNA:   3'- gCGCGU---CGGCGCAGC-----CGCUaCAG-GCC- -5'
17041 3' -60.9 NC_004333.2 + 2698 0.7 0.254867
Target:  5'- gGCgGCGGCCGacaggccgaucuCGUCGGCGAaguUGUUCGu -3'
miRNA:   3'- gCG-CGUCGGC------------GCAGCCGCU---ACAGGCc -5'
17041 3' -60.9 NC_004333.2 + 28988 0.69 0.290695
Target:  5'- uGCGCGGCCGCcggGUCGGCGugcgcaucgcgCgCGGc -3'
miRNA:   3'- gCGCGUCGGCG---CAGCCGCuaca-------G-GCC- -5'
17041 3' -60.9 NC_004333.2 + 30686 0.68 0.316703
Target:  5'- uCGCGCcGCCGCcggCGGCGGcaacuucGUCCuGGa -3'
miRNA:   3'- -GCGCGuCGGCGca-GCCGCUa------CAGG-CC- -5'
17041 3' -60.9 NC_004333.2 + 38371 0.68 0.302043
Target:  5'- aCGCGCuGUCGCGUgucgggugcgcCGGCG-UGacgCCGGc -3'
miRNA:   3'- -GCGCGuCGGCGCA-----------GCCGCuACa--GGCC- -5'
17041 3' -60.9 NC_004333.2 + 32849 0.69 0.287911
Target:  5'- aGCGCGGCCuGCucgaGUCGGuCGAUGUUg-- -3'
miRNA:   3'- gCGCGUCGG-CG----CAGCC-GCUACAGgcc -5'
17041 3' -60.9 NC_004333.2 + 11708 0.73 0.144901
Target:  5'- aGCGCcgGGCgGCGUgcuggcguccUGcGCGAUGUCCGGc -3'
miRNA:   3'- gCGCG--UCGgCGCA----------GC-CGCUACAGGCC- -5'
17041 3' -60.9 NC_004333.2 + 2383 0.68 0.308574
Target:  5'- gGCGUAGCCcaugacgGCGcCGGCGGUcGcCUGGu -3'
miRNA:   3'- gCGCGUCGG-------CGCaGCCGCUA-CaGGCC- -5'
17041 3' -60.9 NC_004333.2 + 31234 0.72 0.18295
Target:  5'- uCGCGaCGGCCGCG-CGGCGcagcgccgucucgGUGUUCGu -3'
miRNA:   3'- -GCGC-GUCGGCGCaGCCGC-------------UACAGGCc -5'
17041 3' -60.9 NC_004333.2 + 13872 0.69 0.274304
Target:  5'- aGCGC-GCCGCGcCGcGCGAaGUcggCCGGc -3'
miRNA:   3'- gCGCGuCGGCGCaGC-CGCUaCA---GGCC- -5'
17041 3' -60.9 NC_004333.2 + 17062 0.68 0.309307
Target:  5'- uCGCGguguucCAGCCGCGccggaacaUCGGCGAa--CCGGg -3'
miRNA:   3'- -GCGC------GUCGGCGC--------AGCCGCUacaGGCC- -5'
17041 3' -60.9 NC_004333.2 + 20556 0.68 0.324232
Target:  5'- cCGCGCcGCUGauCGUCGGCGc-GUCgGGu -3'
miRNA:   3'- -GCGCGuCGGC--GCAGCCGCuaCAGgCC- -5'
17041 3' -60.9 NC_004333.2 + 30336 0.71 0.198156
Target:  5'- aCGCGCGGCCGCacCGGCagacaguuucacGcgGUUCGGa -3'
miRNA:   3'- -GCGCGUCGGCGcaGCCG------------CuaCAGGCC- -5'
17041 3' -60.9 NC_004333.2 + 37370 0.7 0.242546
Target:  5'- aCGUGCA-CCGCGUCGcGCGGccGUCCu- -3'
miRNA:   3'- -GCGCGUcGGCGCAGC-CGCUa-CAGGcc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.