miRNA display CGI


Results 1 - 20 of 84 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17041 3' -60.9 NC_004333.2 + 2171 0.7 0.235984
Target:  5'- aGCGCAGgCCGUGccagcccUCGGCGccgaGUGgcaggCCGGg -3'
miRNA:   3'- gCGCGUC-GGCGC-------AGCCGC----UACa----GGCC- -5'
17041 3' -60.9 NC_004333.2 + 2383 0.68 0.308574
Target:  5'- gGCGUAGCCcaugacgGCGcCGGCGGUcGcCUGGu -3'
miRNA:   3'- gCGCGUCGG-------CGCaGCCGCUA-CaGGCC- -5'
17041 3' -60.9 NC_004333.2 + 2698 0.7 0.254867
Target:  5'- gGCgGCGGCCGacaggccgaucuCGUCGGCGAaguUGUUCGu -3'
miRNA:   3'- gCG-CGUCGGC------------GCAGCCGCU---ACAGGCc -5'
17041 3' -60.9 NC_004333.2 + 3049 0.67 0.380619
Target:  5'- gGCaGCuGGCCGcCGUUGaCGAUGcCCGGa -3'
miRNA:   3'- gCG-CG-UCGGC-GCAGCcGCUACaGGCC- -5'
17041 3' -60.9 NC_004333.2 + 3121 0.69 0.294911
Target:  5'- gGCGCGGCCGCG-CGGUGuucagcGUuuGc -3'
miRNA:   3'- gCGCGUCGGCGCaGCCGCua----CAggCc -5'
17041 3' -60.9 NC_004333.2 + 3559 0.66 0.406712
Target:  5'- cCGCGCAG-CGCGUCGGcCGAccacauagUGcgCCa- -3'
miRNA:   3'- -GCGCGUCgGCGCAGCC-GCU--------ACa-GGcc -5'
17041 3' -60.9 NC_004333.2 + 8393 0.72 0.178733
Target:  5'- aGCGCgAGCgGCGUCGGUcgGAUcGUCCa- -3'
miRNA:   3'- gCGCG-UCGgCGCAGCCG--CUA-CAGGcc -5'
17041 3' -60.9 NC_004333.2 + 8514 0.73 0.147221
Target:  5'- aGCGC-GCCGCcUCGGCGAccgugaaguucgcGUCCGGc -3'
miRNA:   3'- gCGCGuCGGCGcAGCCGCUa------------CAGGCC- -5'
17041 3' -60.9 NC_004333.2 + 8927 0.68 0.339687
Target:  5'- gCGaCGCGGCuucguuCGCGcCGGCGcUGUCCa- -3'
miRNA:   3'- -GC-GCGUCG------GCGCaGCCGCuACAGGcc -5'
17041 3' -60.9 NC_004333.2 + 9008 0.67 0.363857
Target:  5'- gCGCGCAGCaCGgG-CGGCagGAUGUCg-- -3'
miRNA:   3'- -GCGCGUCG-GCgCaGCCG--CUACAGgcc -5'
17041 3' -60.9 NC_004333.2 + 9711 0.8 0.049037
Target:  5'- gGCGCAcgcgguucgcgaaacGCCGCGUCGGCGAcaUGagcgCCGGa -3'
miRNA:   3'- gCGCGU---------------CGGCGCAGCCGCU--ACa---GGCC- -5'
17041 3' -60.9 NC_004333.2 + 11708 0.73 0.144901
Target:  5'- aGCGCcgGGCgGCGUgcuggcguccUGcGCGAUGUCCGGc -3'
miRNA:   3'- gCGCG--UCGgCGCA----------GC-CGCUACAGGCC- -5'
17041 3' -60.9 NC_004333.2 + 13126 0.66 0.433898
Target:  5'- uCGCG-AGCUGCGUCauGCuGAUG-CCGGc -3'
miRNA:   3'- -GCGCgUCGGCGCAGc-CG-CUACaGGCC- -5'
17041 3' -60.9 NC_004333.2 + 13204 0.68 0.339687
Target:  5'- uGUGCAGgCGCGUCGcGUGGacUUCGGu -3'
miRNA:   3'- gCGCGUCgGCGCAGC-CGCUacAGGCC- -5'
17041 3' -60.9 NC_004333.2 + 13366 0.68 0.324232
Target:  5'- gGCGCGGCaCGag-CGGCG-UGUCCa- -3'
miRNA:   3'- gCGCGUCG-GCgcaGCCGCuACAGGcc -5'
17041 3' -60.9 NC_004333.2 + 13872 0.69 0.274304
Target:  5'- aGCGC-GCCGCGcCGcGCGAaGUcggCCGGc -3'
miRNA:   3'- gCGCGuCGGCGCaGC-CGCUaCA---GGCC- -5'
17041 3' -60.9 NC_004333.2 + 13947 0.68 0.332667
Target:  5'- aGCGUGGCCGCcUUGGCGAcuucaggcggcggCCGGu -3'
miRNA:   3'- gCGCGUCGGCGcAGCCGCUaca----------GGCC- -5'
17041 3' -60.9 NC_004333.2 + 15489 0.66 0.39789
Target:  5'- aGCGCaacagGGCUGCucgCGGCGGUcaCCGGc -3'
miRNA:   3'- gCGCG-----UCGGCGca-GCCGCUAcaGGCC- -5'
17041 3' -60.9 NC_004333.2 + 15648 0.66 0.39789
Target:  5'- gCGCGCcGCgCGaCGUCGGCaaacgcuUCCGGg -3'
miRNA:   3'- -GCGCGuCG-GC-GCAGCCGcuac---AGGCC- -5'
17041 3' -60.9 NC_004333.2 + 16816 0.75 0.102212
Target:  5'- aCGCGCGGCUGCGucgcUCGGCaGcgGUCUGa -3'
miRNA:   3'- -GCGCGUCGGCGC----AGCCG-CuaCAGGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.