miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17041 5' -54.4 NC_004333.2 + 20745 0.66 0.756922
Target:  5'- uGCCGgaCAUCGCCGacg-CGgCUGCGc -3'
miRNA:   3'- gCGGCa-GUAGUGGCguaaGCaGACGC- -5'
17041 5' -54.4 NC_004333.2 + 42943 0.66 0.750672
Target:  5'- gGCCGgcuUCAUCGCCGaauaccccgaGUUUGCGa -3'
miRNA:   3'- gCGGC---AGUAGUGGCguaag-----CAGACGC- -5'
17041 5' -54.4 NC_004333.2 + 46348 0.66 0.74648
Target:  5'- gCGCCGUUAUgCGCCGCug-CGgauuugGCGc -3'
miRNA:   3'- -GCGGCAGUA-GUGGCGuaaGCaga---CGC- -5'
17041 5' -54.4 NC_004333.2 + 4915 0.66 0.736981
Target:  5'- gCGCCGUCGccauccaaaacaucgCGCCGUAcugCGUCUGg- -3'
miRNA:   3'- -GCGGCAGUa--------------GUGGCGUaa-GCAGACgc -5'
17041 5' -54.4 NC_004333.2 + 3690 0.66 0.73592
Target:  5'- aGCCGUCgcGUCguaGCUGCGgaUCGUCUGg- -3'
miRNA:   3'- gCGGCAG--UAG---UGGCGUa-AGCAGACgc -5'
17041 5' -54.4 NC_004333.2 + 1225 0.66 0.73592
Target:  5'- uGUCGUCGgcgcgCGCCGCcUUgG-CUGCGc -3'
miRNA:   3'- gCGGCAGUa----GUGGCGuAAgCaGACGC- -5'
17041 5' -54.4 NC_004333.2 + 22499 0.66 0.73592
Target:  5'- gGCUGaUCAggUCGCCGCGUUCG-CgacgGCc -3'
miRNA:   3'- gCGGC-AGU--AGUGGCGUAAGCaGa---CGc -5'
17041 5' -54.4 NC_004333.2 + 34644 0.66 0.725255
Target:  5'- cCGCCGgcggCAaCGCCGCGagcaCGUCggacgGCGa -3'
miRNA:   3'- -GCGGCa---GUaGUGGCGUaa--GCAGa----CGC- -5'
17041 5' -54.4 NC_004333.2 + 2065 0.66 0.725255
Target:  5'- uGCCGUagcgcgCACCGCGcUCGgccaaggUUGCGg -3'
miRNA:   3'- gCGGCAgua---GUGGCGUaAGCa------GACGC- -5'
17041 5' -54.4 NC_004333.2 + 30680 0.66 0.725255
Target:  5'- aGCCGUUcgCGCCGCcgcCGgcgGCGg -3'
miRNA:   3'- gCGGCAGuaGUGGCGuaaGCagaCGC- -5'
17041 5' -54.4 NC_004333.2 + 28762 0.66 0.714494
Target:  5'- gCGCCG-CGUCgACCGCGcggGUCgcgGCGg -3'
miRNA:   3'- -GCGGCaGUAG-UGGCGUaagCAGa--CGC- -5'
17041 5' -54.4 NC_004333.2 + 22576 0.67 0.703651
Target:  5'- cCGCCGUCGUCACgacaucggCGCucgugUUGUUcGCGu -3'
miRNA:   3'- -GCGGCAGUAGUG--------GCGua---AGCAGaCGC- -5'
17041 5' -54.4 NC_004333.2 + 9408 0.67 0.692736
Target:  5'- uCGUCGUCuUCGCUGCccugCGggCUGCGc -3'
miRNA:   3'- -GCGGCAGuAGUGGCGuaa-GCa-GACGC- -5'
17041 5' -54.4 NC_004333.2 + 26636 0.67 0.692736
Target:  5'- uCGuuGUCG-CACCGCcgcUCGUgaGCGu -3'
miRNA:   3'- -GCggCAGUaGUGGCGua-AGCAgaCGC- -5'
17041 5' -54.4 NC_004333.2 + 37388 0.67 0.681763
Target:  5'- gGCCGUCcUCAUCGUccuaCGUCgGCGc -3'
miRNA:   3'- gCGGCAGuAGUGGCGuaa-GCAGaCGC- -5'
17041 5' -54.4 NC_004333.2 + 20881 0.67 0.681763
Target:  5'- gGCCG-CAUCAUCGguUUCGcCgGCu -3'
miRNA:   3'- gCGGCaGUAGUGGCguAAGCaGaCGc -5'
17041 5' -54.4 NC_004333.2 + 33329 0.67 0.680663
Target:  5'- cCGgCGUCAUUcugaucgGCaCGCcgUgGUCUGCGa -3'
miRNA:   3'- -GCgGCAGUAG-------UG-GCGuaAgCAGACGC- -5'
17041 5' -54.4 NC_004333.2 + 36600 0.67 0.670741
Target:  5'- aCGUCGacaAUCAgCGCAUguggcaaucgCGUCUGCGc -3'
miRNA:   3'- -GCGGCag-UAGUgGCGUAa---------GCAGACGC- -5'
17041 5' -54.4 NC_004333.2 + 15887 0.68 0.648597
Target:  5'- aGCCGcCGUgACCGCcaUCGUagacgaUGCGa -3'
miRNA:   3'- gCGGCaGUAgUGGCGuaAGCAg-----ACGC- -5'
17041 5' -54.4 NC_004333.2 + 45611 0.68 0.648597
Target:  5'- gGCCGUgAUUGCCGa--UCGUCUcGCa -3'
miRNA:   3'- gCGGCAgUAGUGGCguaAGCAGA-CGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.