miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17052 3' -62.1 NC_004333.2 + 16544 0.66 0.382246
Target:  5'- aUCGGCCgacuguucacgcGCGcgGCcacAGCgGCCGaGAcGGCg -3'
miRNA:   3'- -GGCCGG------------UGCuaCG---UCGgCGGC-CU-CCG- -5'
17052 3' -62.1 NC_004333.2 + 45435 0.66 0.382246
Target:  5'- gCGGCCGCGAUcuCGGCUGUgacGGGCa -3'
miRNA:   3'- gGCCGGUGCUAc-GUCGGCGgccUCCG- -5'
17052 3' -62.1 NC_004333.2 + 45592 0.66 0.382246
Target:  5'- cCCGGUCGCGAgaucGUgauGCCGgUCGGucGCa -3'
miRNA:   3'- -GGCCGGUGCUa---CGu--CGGC-GGCCucCG- -5'
17052 3' -62.1 NC_004333.2 + 10198 0.66 0.382246
Target:  5'- gUCGcGCaCGCGcAUGCGGCCGUCGGcaucaaaGCu -3'
miRNA:   3'- -GGC-CG-GUGC-UACGUCGGCGGCCuc-----CG- -5'
17052 3' -62.1 NC_004333.2 + 37470 0.66 0.381394
Target:  5'- uCCGGCgcucgccaaACGcAUGCagaucgagcaaugGGCCGCCGGccacGGCc -3'
miRNA:   3'- -GGCCGg--------UGC-UACG-------------UCGGCGGCCu---CCG- -5'
17052 3' -62.1 NC_004333.2 + 4866 0.66 0.379693
Target:  5'- uCCGGCgucggcucgaucggCACGAgcGCauAGCCgGCCGGGaucGGCg -3'
miRNA:   3'- -GGCCG--------------GUGCUa-CG--UCGG-CGGCCU---CCG- -5'
17052 3' -62.1 NC_004333.2 + 44389 0.66 0.373782
Target:  5'- cUCGGCgGCGcGUGCgcgguacaacGGCCuGCCGGGcucgcuGGCu -3'
miRNA:   3'- -GGCCGgUGC-UACG----------UCGG-CGGCCU------CCG- -5'
17052 3' -62.1 NC_004333.2 + 19331 0.66 0.373782
Target:  5'- gCCGGCUACGAacGCAGCCgGCaCGauguguGGUu -3'
miRNA:   3'- -GGCCGGUGCUa-CGUCGG-CG-GCcu----CCG- -5'
17052 3' -62.1 NC_004333.2 + 44258 0.66 0.365446
Target:  5'- gUCGGCCugcCGccGCuGCCGCCu--GGCg -3'
miRNA:   3'- -GGCCGGu--GCuaCGuCGGCGGccuCCG- -5'
17052 3' -62.1 NC_004333.2 + 3209 0.66 0.364619
Target:  5'- gCCGGCC-CGgcGC-GCCGCCcGccccgaugacgccGGGCa -3'
miRNA:   3'- -GGCCGGuGCuaCGuCGGCGGcC-------------UCCG- -5'
17052 3' -62.1 NC_004333.2 + 43146 0.66 0.364619
Target:  5'- gCCGGCCGCc---UGGCCGCCugucaagcgcgacGGaAGGCa -3'
miRNA:   3'- -GGCCGGUGcuacGUCGGCGG-------------CC-UCCG- -5'
17052 3' -62.1 NC_004333.2 + 27642 0.66 0.357239
Target:  5'- gCGGCCAUGuuacaGGCCGCCagcgagcggcgcGGcGGCg -3'
miRNA:   3'- gGCCGGUGCuacg-UCGGCGG------------CCuCCG- -5'
17052 3' -62.1 NC_004333.2 + 45016 0.66 0.357239
Target:  5'- uCCGGCCGCucGAccgcGCGuGgCGCUGGcGGCg -3'
miRNA:   3'- -GGCCGGUG--CUa---CGU-CgGCGGCCuCCG- -5'
17052 3' -62.1 NC_004333.2 + 20967 0.66 0.356426
Target:  5'- aCGGCgauguaccgCGCGAaGCAcggucuGCCGCCacaccucGGGGGCa -3'
miRNA:   3'- gGCCG---------GUGCUaCGU------CGGCGG-------CCUCCG- -5'
17052 3' -62.1 NC_004333.2 + 41831 0.66 0.354802
Target:  5'- aCCGGCgcaucguaaaaucgCGCGGUGCGGUCGUccucaCGGcuGCg -3'
miRNA:   3'- -GGCCG--------------GUGCUACGUCGGCG-----GCCucCG- -5'
17052 3' -62.1 NC_004333.2 + 23479 0.66 0.349163
Target:  5'- gUCGGCCGCGcUGaucCAGuuGCCGaGGaagucGGCa -3'
miRNA:   3'- -GGCCGGUGCuAC---GUCggCGGC-CU-----CCG- -5'
17052 3' -62.1 NC_004333.2 + 27837 0.66 0.341217
Target:  5'- gCCGGUCGCGGUacccGuCGGCacgGCCGGcaagccuGGCa -3'
miRNA:   3'- -GGCCGGUGCUA----C-GUCGg--CGGCCu------CCG- -5'
17052 3' -62.1 NC_004333.2 + 32300 0.66 0.341217
Target:  5'- gCGGUCACG--GCGGCuCGCuCGcGGGCu -3'
miRNA:   3'- gGCCGGUGCuaCGUCG-GCG-GCcUCCG- -5'
17052 3' -62.1 NC_004333.2 + 23671 0.66 0.340429
Target:  5'- gCCGGCCuccgGCGGcUGCaucguGGCCGgCGGAaaaccgagcgauuGGCu -3'
miRNA:   3'- -GGCCGG----UGCU-ACG-----UCGGCgGCCU-------------CCG- -5'
17052 3' -62.1 NC_004333.2 + 24208 0.66 0.333403
Target:  5'- aCCGGCCGCc---UGGCCGCCGuaaaacGGCg -3'
miRNA:   3'- -GGCCGGUGcuacGUCGGCGGCcu----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.