Results 1 - 20 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17058 | 5' | -44.7 | NC_004333.2 | + | 22026 | 1.16 | 0.005171 |
Target: 5'- gCGAAAUGAAAACGUACCAUCGCACGCa -3' miRNA: 3'- -GCUUUACUUUUGCAUGGUAGCGUGCG- -5' |
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17058 | 5' | -44.7 | NC_004333.2 | + | 33907 | 0.79 | 0.630366 |
Target: 5'- cCGAugcucGAAGGCGUGCCGcCGCugGCu -3' miRNA: 3'- -GCUuua--CUUUUGCAUGGUaGCGugCG- -5' |
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17058 | 5' | -44.7 | NC_004333.2 | + | 28999 | 0.77 | 0.746919 |
Target: 5'- -----cGGGucGGCGUGCgCAUCGCGCGCg -3' miRNA: 3'- gcuuuaCUU--UUGCAUG-GUAGCGUGCG- -5' |
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17058 | 5' | -44.7 | NC_004333.2 | + | 21217 | 0.76 | 0.811266 |
Target: 5'- --cAAUGG--GCG-GCCGUCGCGCGCa -3' miRNA: 3'- gcuUUACUuuUGCaUGGUAGCGUGCG- -5' |
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17058 | 5' | -44.7 | NC_004333.2 | + | 2473 | 0.75 | 0.827218 |
Target: 5'- uCGAGAUGcAGGCGUGCguugugguagcugAUCGCGCGCc -3' miRNA: 3'- -GCUUUACuUUUGCAUGg------------UAGCGUGCG- -5' |
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17058 | 5' | -44.7 | NC_004333.2 | + | 43437 | 0.75 | 0.840677 |
Target: 5'- uCGGGcUGAcGGACGcGCgCAUCGCGCGCu -3' miRNA: 3'- -GCUUuACU-UUUGCaUG-GUAGCGUGCG- -5' |
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17058 | 5' | -44.7 | NC_004333.2 | + | 2183 | 0.75 | 0.849986 |
Target: 5'- aGGAAcuugccUGAcAGCuUGCCGUCGUACGCg -3' miRNA: 3'- gCUUU------ACUuUUGcAUGGUAGCGUGCG- -5' |
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17058 | 5' | -44.7 | NC_004333.2 | + | 34396 | 0.74 | 0.867799 |
Target: 5'- uGGAAUGAuccGCGUGCCAuauUUGCACa- -3' miRNA: 3'- gCUUUACUuu-UGCAUGGU---AGCGUGcg -5' |
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17058 | 5' | -44.7 | NC_004333.2 | + | 37267 | 0.74 | 0.884474 |
Target: 5'- aGAAccGAGAACGcACUGUCGUcgGCGCa -3' miRNA: 3'- gCUUuaCUUUUGCaUGGUAGCG--UGCG- -5' |
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17058 | 5' | -44.7 | NC_004333.2 | + | 43429 | 0.74 | 0.892364 |
Target: 5'- uCGAugucGGUGAAAgcugGCGUGCUcgCGgGCGCg -3' miRNA: 3'- -GCU----UUACUUU----UGCAUGGuaGCgUGCG- -5' |
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17058 | 5' | -44.7 | NC_004333.2 | + | 25652 | 0.73 | 0.899204 |
Target: 5'- gCGGuc-GAAAGCGUcuugccgGCCGUCGCgaACGCg -3' miRNA: 3'- -GCUuuaCUUUUGCA-------UGGUAGCG--UGCG- -5' |
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17058 | 5' | -44.7 | NC_004333.2 | + | 29859 | 0.73 | 0.90722 |
Target: 5'- aCGgcGUGAGGAuCGUGCgCA-CGCGCGUg -3' miRNA: 3'- -GCuuUACUUUU-GCAUG-GUaGCGUGCG- -5' |
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17058 | 5' | -44.7 | NC_004333.2 | + | 41026 | 0.73 | 0.920813 |
Target: 5'- uCGAuAUGAAGACGgcgcgcacgAUCGUCGaCACGUu -3' miRNA: 3'- -GCUuUACUUUUGCa--------UGGUAGC-GUGCG- -5' |
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17058 | 5' | -44.7 | NC_004333.2 | + | 44643 | 0.72 | 0.938799 |
Target: 5'- uCGAAAUGGAcauGCGcaucaACCAUCGCG-GCa -3' miRNA: 3'- -GCUUUACUUu--UGCa----UGGUAGCGUgCG- -5' |
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17058 | 5' | -44.7 | NC_004333.2 | + | 28336 | 0.72 | 0.949193 |
Target: 5'- cCGAAcAUGcgcauCGUACCAUCGCGC-Cg -3' miRNA: 3'- -GCUU-UACuuuu-GCAUGGUAGCGUGcG- -5' |
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17058 | 5' | -44.7 | NC_004333.2 | + | 10797 | 0.72 | 0.949193 |
Target: 5'- gGAcGAUGAGGACG-GCCG-CGCgACGCg -3' miRNA: 3'- gCU-UUACUUUUGCaUGGUaGCG-UGCG- -5' |
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17058 | 5' | -44.7 | NC_004333.2 | + | 790 | 0.71 | 0.953921 |
Target: 5'- uCGAccuUGA--GCGUGCCGgUCGCcgGCGCa -3' miRNA: 3'- -GCUuu-ACUuuUGCAUGGU-AGCG--UGCG- -5' |
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17058 | 5' | -44.7 | NC_004333.2 | + | 36833 | 0.71 | 0.958342 |
Target: 5'- -aAGGUGAcGACGaACCGcgccgccuucaUCGCGCGCg -3' miRNA: 3'- gcUUUACUuUUGCaUGGU-----------AGCGUGCG- -5' |
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17058 | 5' | -44.7 | NC_004333.2 | + | 4828 | 0.71 | 0.962464 |
Target: 5'- cCGGAAucUGGAuaguCGgcugACCGUaCGCGCGCg -3' miRNA: 3'- -GCUUU--ACUUuu--GCa---UGGUA-GCGUGCG- -5' |
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17058 | 5' | -44.7 | NC_004333.2 | + | 18036 | 0.7 | 0.969838 |
Target: 5'- aCGAAA-GGcgGCG-GCCAagGCGCGCa -3' miRNA: 3'- -GCUUUaCUuuUGCaUGGUagCGUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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