miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17058 5' -44.7 NC_004333.2 + 28999 0.77 0.746919
Target:  5'- -----cGGGucGGCGUGCgCAUCGCGCGCg -3'
miRNA:   3'- gcuuuaCUU--UUGCAUG-GUAGCGUGCG- -5'
17058 5' -44.7 NC_004333.2 + 33352 0.69 0.987574
Target:  5'- -----cGAGAACGgcgcGCCGUCGUggaACGCc -3'
miRNA:   3'- gcuuuaCUUUUGCa---UGGUAGCG---UGCG- -5'
17058 5' -44.7 NC_004333.2 + 18482 0.69 0.989239
Target:  5'- -----cGGAGGCGUACCcgCcguugccgGCACGCc -3'
miRNA:   3'- gcuuuaCUUUUGCAUGGuaG--------CGUGCG- -5'
17058 5' -44.7 NC_004333.2 + 44907 0.66 0.998984
Target:  5'- --uGAUGAGcuGCGUcucgAUgCGUCGCGCGCg -3'
miRNA:   3'- gcuUUACUUu-UGCA----UG-GUAGCGUGCG- -5'
17058 5' -44.7 NC_004333.2 + 34396 0.74 0.867799
Target:  5'- uGGAAUGAuccGCGUGCCAuauUUGCACa- -3'
miRNA:   3'- gCUUUACUuu-UGCAUGGU---AGCGUGcg -5'
17058 5' -44.7 NC_004333.2 + 25652 0.73 0.899204
Target:  5'- gCGGuc-GAAAGCGUcuugccgGCCGUCGCgaACGCg -3'
miRNA:   3'- -GCUuuaCUUUUGCA-------UGGUAGCG--UGCG- -5'
17058 5' -44.7 NC_004333.2 + 44643 0.72 0.938799
Target:  5'- uCGAAAUGGAcauGCGcaucaACCAUCGCG-GCa -3'
miRNA:   3'- -GCUUUACUUu--UGCa----UGGUAGCGUgCG- -5'
17058 5' -44.7 NC_004333.2 + 28336 0.72 0.949193
Target:  5'- cCGAAcAUGcgcauCGUACCAUCGCGC-Cg -3'
miRNA:   3'- -GCUU-UACuuuu-GCAUGGUAGCGUGcG- -5'
17058 5' -44.7 NC_004333.2 + 47695 0.7 0.969838
Target:  5'- gCGAAGUacGAcgAAGCGUucacgcucgccgGCaCGUCGCGCGCc -3'
miRNA:   3'- -GCUUUA--CU--UUUGCA------------UG-GUAGCGUGCG- -5'
17058 5' -44.7 NC_004333.2 + 28525 0.69 0.987574
Target:  5'- gGGAGUGcgcgccGAcGCGUGCauucccggCAUCGCACGUg -3'
miRNA:   3'- gCUUUAC------UUuUGCAUG--------GUAGCGUGCG- -5'
17058 5' -44.7 NC_004333.2 + 44710 0.7 0.976114
Target:  5'- gGAcuUGAAGGCGUucGCCGagGCGCaGCu -3'
miRNA:   3'- gCUuuACUUUUGCA--UGGUagCGUG-CG- -5'
17058 5' -44.7 NC_004333.2 + 4828 0.71 0.962464
Target:  5'- cCGGAAucUGGAuaguCGgcugACCGUaCGCGCGCg -3'
miRNA:   3'- -GCUUU--ACUUuu--GCa---UGGUA-GCGUGCG- -5'
17058 5' -44.7 NC_004333.2 + 21217 0.76 0.811266
Target:  5'- --cAAUGG--GCG-GCCGUCGCGCGCa -3'
miRNA:   3'- gcuUUACUuuUGCaUGGUAGCGUGCG- -5'
17058 5' -44.7 NC_004333.2 + 27190 0.69 0.983655
Target:  5'- cCGAGGUGu-GGCGgcagACCGugcuUCGCGCGg -3'
miRNA:   3'- -GCUUUACuuUUGCa---UGGU----AGCGUGCg -5'
17058 5' -44.7 NC_004333.2 + 43437 0.75 0.840677
Target:  5'- uCGGGcUGAcGGACGcGCgCAUCGCGCGCu -3'
miRNA:   3'- -GCUUuACU-UUUGCaUG-GUAGCGUGCG- -5'
17058 5' -44.7 NC_004333.2 + 790 0.71 0.953921
Target:  5'- uCGAccuUGA--GCGUGCCGgUCGCcgGCGCa -3'
miRNA:   3'- -GCUuu-ACUuuUGCAUGGU-AGCG--UGCG- -5'
17058 5' -44.7 NC_004333.2 + 48091 0.69 0.983655
Target:  5'- aCGAGGcGcAGGCGgcaACCGggCGCGCGCa -3'
miRNA:   3'- -GCUUUaCuUUUGCa--UGGUa-GCGUGCG- -5'
17058 5' -44.7 NC_004333.2 + 3370 0.69 0.987574
Target:  5'- uCGAGcgGAAcaaugucgaccGGCGUcGCCGUCGU-CGCg -3'
miRNA:   3'- -GCUUuaCUU-----------UUGCA-UGGUAGCGuGCG- -5'
17058 5' -44.7 NC_004333.2 + 2183 0.75 0.849986
Target:  5'- aGGAAcuugccUGAcAGCuUGCCGUCGUACGCg -3'
miRNA:   3'- gCUUU------ACUuUUGcAUGGUAGCGUGCG- -5'
17058 5' -44.7 NC_004333.2 + 41026 0.73 0.920813
Target:  5'- uCGAuAUGAAGACGgcgcgcacgAUCGUCGaCACGUu -3'
miRNA:   3'- -GCUuUACUUUUGCa--------UGGUAGC-GUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.